Parental gene:

IDH1, ENSSSCG00000023264

Aliases:None
Description:isocitrate dehydrogenase 1 (NADP+), soluble [Source:HGNC Symbol;Acc:5382]
Organism:Pig (Sus scrofa)
Coordinates:15:122861671..122879852(-)


>ENSSSCG00000023264
GTGTCCTGTCTTTTTTCTTCTTCAAGGTTTATCAAAGCTAAAATGTCTCAAAAAATCCAGGGTGGTTCTGTGGTAGAGAT
GCAAGGAGATGAAATGACTCGAATCATTTGGGAGTTGATTAAAGAGAAACTCATTTTTCCCTATGTGGAATTGGACCTGC
ACAGCTATGACTTAGGCATAGAGAATCGTGATGCCACCAATGACCAGGTCACCAAGGATGCCGCAGAAGCTATAAAGAAA
TACAACGTTGGTGTCAAGTGTGCCACCATCACCCCCGATGAGAAGAGAGTGGAGGAGTTCAAGTTGAAACAAATGTGGAA
ATCACCAAATGGCACCATCCGAAATATCCTGGGTGGCACTGTCTTTAGGGAAGCTATTATCTGCAAAAATATTCCTCGGC
TTGTGAGCGGTTGGGTAAAACCCATCATCATAGGTCGTCATGCTTACGGGGATCAATACAGGGCAACCGATTTTGTAGTT
CCTGGACCTGGAAAAGTAGAGATATCCTACACGCCAAGGGATGGATCCCCCAAAATGACATATATGGTACATGACTTCAC
AGACTGTGGTGGTGTTGCCATGGGGATGTACAATCAAGATAAGTCAATTGAAGATTTTGCACACAGTTCTTTCCAGATGG
CTCTGTCCAAGGGTTGGCCTCTGTACCTGAGCACCAAAAATACCATCCTGAAGAAATATGATGGACGTTTTAAAGACATC
TTTCAGGAGATATATGACAAGCAGTACAAATCCCAGTTTGAAGCTCAGAAGATCTGGTATGAGCACCGGCTCATCGATGA
CATGGTGGCCCAAGCTATGAAATCGGAGGGCGGCTTCATCTGGGCCTGTAAAAACTATGATGGTGACGTGCAGTCGGACT
CTGTGGCCCAAGGTTATGGCTCTCTTGGCATGATGACCAGCGTGCTGATTTGTCCAGATGGCAAGACAGTAGAAGCCGAG
GCTGCCCATGGGACTGTAACACGTCACTACCGTATGTACCAGAAAGGACAGGAGACGTCCACCAATCCCATTGCTTCCAT
TTTTGCCTGGACCAGAGGCCTAGCCCACAGAGCTAAGCTGGATAGCAATAAAGAGCTCAGCATCTTTGCAAATGCTTTGG
AAGAAGTCTGTATTGAGACCATTGAGGCTGGCTTCATGACCAAGGACTTGGCTGCTTGTATTAAAGGTTTACCCAACGTG
CAACGTTCTGACTACTTGAATACATTTGAGTTCATGGACAAACTCGGAGAAAACTTGAAGATAAAACTAGCGCAGGCCAA
ACTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 24 .56 RPM
SRP014902_testis 87 .56 RPM
SRP018288_heart 34 .21 RPM
SRP018288_kidney 253 .45 RPM
SRP018288_liver 405 .53 RPM
SRP018288_lung 63 .64 RPM
SRP018856_adipose 433 .37 RPM
SRP035408_brain 55 .36 RPM
SRP035408_liver 511 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020527 ortholog_one2one 1 retrogene
retro_btau_1235,
Choloepus hoffmanni ENSCHOG00000004574 ortholog_one2one 2 retrogenes
retro_chof_2158, retro_chof_897,
Cavia porcellus ENSCPOG00000013587 ortholog_one2one 1 retrogene
retro_cpor_1010,
Homo sapiens ENSG00000138413 ortholog_one2one 1 retrogene
retro_hsap_3554,
Gorilla gorilla ENSGGOG00000012619 ortholog_one2one 1 retrogene
retro_ggor_2400,
Microcebus murinus ENSMICG00000009797 ortholog_one2one 1 retrogene
retro_mmur_1364,
Macaca mulatta ENSMMUG00000016077 ortholog_one2one 1 retrogene
retro_mmul_1817,
Nomascus leucogenys ENSNLEG00000007143 ortholog_one2one 3 retrogenes
retro_nleu_1169, retro_nleu_2328, retro_nleu_3117,
Otolemur garnettii ENSOGAG00000014848 ortholog_one2one 4 retrogenes
retro_ogar_1488, retro_ogar_2270, retro_ogar_2925, retro_ogar_3057,
Pongo abelii ENSPPYG00000013125 ortholog_one2one 2 retrogenes
retro_pabe_2935, retro_pabe_926,
Pan troglodytes ENSPTRG00000012865 ortholog_one2one 1 retrogene
retro_ptro_2415,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_549 86.22 98.13
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Download FASTA sequences of all ENSSSCG00000023264 retrocopies