Parental gene:

ENSSTOG00000015459

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393377.1:1666080..1674173(+)


>ENSSTOG00000015459
ATGTCTTCCCACAAAGGAACTGTGGTGGCACAGGGCAACAGGGCTCCTGCCAGTAACAGGGAAACTGACTCAGTGGAACT
GGCTGAACTGGGACCCCTGCTAGAAGAGAAGGGCAAGCGGGTAATTGCCAACCCAAACAAGGCTGAAGAAGAACAAACAT
GCCCAGTGCCCCAGGAAGAAGAGGAGGAGGTACGGGTACTGACACTTCCCCTGCAGGCCCACCATGCCATGGAGAAGATG
GAGGAGTTCGTATATAAGGTCTGGGAGGGGCGTTGGAGGGTCATCCCATATGATGTACTTCCTGACTGGCTGAAGGACAA
TGACTATCTGCTACATGGCCACAGACCACCCATGCCCTCCTTTCGTGCTTGCTTCAAGAGCATCTTCCGCATCCACACTG
AAACTGGCAACATCTGGACCCATCTGCTTGGTTTCGTACTATTTCTCTTTTTGGGAATCTTGACCATGCTTAGACCAAAT
ATGTACTTCATGGCCCCTCTTCAGGAGAAAGTGGTTTTTGGCATGTTCTTTTTGGGTGCAGTGCTCTGCCTCAGCTTCTC
CTGGCTCTTCCACACCGTCTATTGTCATTCAGAGAAAGTTTCCCGGACTTTTTCCAAACTGGACTATTCAGGGATTGCTC
TACTGATTATGGGGAGCTTTGTCCCCTGGCTCTATTACTCCTTCTACTGCTCCCCACAGCCTCGGCTCATCTACCTCTCC
ATCGTCTGTGTCCTGGGCATCTCTGCCATCATTGTGGCACAGTGGGACCGGTTTGCCACTCCTAAACACCGGCAAACAAG
AGCGGGAGTGTTCCTGGGACTTGGCTTGAGTGGTGTTGTGCCCACCATGCACTTTACTATCGCTGAGGGCTTTGTCAAGG
CCACCACAGTGGGCCAGATGGGCTGGTTCTTCCTCATGGCTGTGATGTACATCACCGGAGCTGGCCTTTATGCTGCTCGG
ATTCCTGAGCGCTTCTTTCCGGGAAAGTTTGACATATGGTTCCAGTCCCATCAGATTTTCCACGTCCTGGTGGTGGCCGC
AGCCTTTGTCCACTTCTATGGGGTCTCCAACCTTCAGGAATTCCGTTATGGCCTGGAAGGTGGCTGTACTGATGACTCCC
TTCTCTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012199 ortholog_one2many 1 retrogene
retro_amel_1853,
Choloepus hoffmanni ENSCHOG00000006450 ortholog_one2many 8 retrogenes
retro_chof_1127, retro_chof_1222, retro_chof_1917, retro_chof_2218, retro_chof_2380, retro_chof_471, retro_chof_749, retro_chof_995,
Callithrix jacchus ENSCJAG00000006268 ortholog_one2many 3 retrogenes
retro_cjac_2262, retro_cjac_740, retro_cjac_741,
Cavia porcellus ENSCPOG00000000482 ortholog_one2many 1 retrogene
retro_cpor_470,
Dipodomys ordii ENSDORG00000006876 ortholog_one2many 1 retrogene
retro_dord_19,
Felis catus ENSFCAG00000013565 ortholog_one2many 1 retrogene
retro_fcat_1514,
Loxodonta africana ENSLAFG00000003520 ortholog_one2many 1 retrogene
retro_lafr_277,
Macropus eugenii ENSMEUG00000015439 ortholog_one2many 1 retrogene
retro_meug_516,
Microcebus murinus ENSMICG00000007942 ortholog_one2many 3 retrogenes
retro_mmur_1199, retro_mmur_184, retro_mmur_764,
Myotis lucifugus ENSMLUG00000016102 possible_ortholog 2 retrogenes
retro_mluc_1275, retro_mluc_200,
Macaca mulatta ENSMMUG00000007046 ortholog_one2many 1 retrogene
retro_mmul_1322,
Mustela putorius furo ENSMPUG00000011215 ortholog_one2many 1 retrogene
retro_mputfur_550,
Otolemur garnettii ENSOGAG00000033821 ortholog_one2one 4 retrogenes
retro_ogar_1558, retro_ogar_1624, retro_ogar_2838, retro_ogar_783,
Ochotona princeps ENSOPRG00000004528 ortholog_one2many 3 retrogenes
retro_opri_101, retro_opri_1050, retro_opri_392,
Pongo abelii ENSPPYG00000000342 ortholog_one2many 1 retrogene
retro_pabe_1072,
Sorex araneus ENSSARG00000007680 ortholog_one2many 1 retrogene
retro_sara_25,
Tupaia belangeri ENSTBEG00000015149 ortholog_one2many 2 retrogenes
retro_tbel_1501, retro_tbel_1804,
Tarsius syrichta ENSTSYG00000001491 possible_ortholog 1 retrogene
retro_tsyr_125,
Tursiops truncatus ENSTTRG00000006381 ortholog_one2many 2 retrogenes
retro_ttru_1055, retro_ttru_863,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_215 84.27 100.00
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2. retro_itri_257 60.18 57.60
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3. retro_itri_512 73.13 53.07
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Download FASTA sequences of all ENSSTOG00000015459 retrocopies