>retro_alyr_17
ATGGTTGAGCTAGACATTCAGATTCCATCAGCATTCGATCCTTTTGCAGAAGCCAAAGATTCAGATGCACCAGGAGCTAA
AGAGAACATTCACATCCGAATCCAGCAGAGGAATGGGAAAAAGAGCTTGACGACTGTTCAAGGGCTAAAGAAAGAGTATA
GCTACGAGAGGATTCTCAAGGATTTGAAGAAAGACTTTTGCTGCAACGGGAACGTTGTGCAGGACAAAGAGCTAGGCAAG
ATCATTCAGCTTCAAGGTGATCAAAGGAAGAAAGTGTCTCAGTTCTTGGTCCAAACTGGGATTGCTAAGAAGGATCAGAT
CAAGATCCACGGTTTCTAA
ORF - retro_alyr_17 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.34 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCN |
| M.ELD.Q.P.AFDPFA.A...D...G.KE..HIR.QQRNG.KSLTTVQGLKKEYSY..ILKDLKK.FCCN |
Retrocopy | MVELDIQIPSAFDPFAEAKDSDA-PGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFCCN |
|
Parental | GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF |
| G.VVQD.ELG..IQLQGDQRK.VS.FLVQ.G..KKD.IKIHGF |
Retrocopy | GNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis lyrata was not studied using RNA-Seq expression data.
Arabidopsis lyrata was not studied using ChIP-Seq data.
Arabidopsis lyrata was not studied using EST data.
Arabidopsis lyrata was not studied using FANTOM5 data.
retro_alyr_17 was not experimentally validated.
Retrocopy orthology:
Arabidopsis lyrata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.