Common name: Lyre-leaved rock-cress
Latin name: Arabidopsis lyrata
Genome assembly: v.1.0
All retrocopies: 34
Parental genes: 34

Summary: Number of retrocopies :
Conserved ORF: 31 ORF 3 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_alyr_1 57.76 % 99.38 % ORF
2. retro_alyr_2 72.59 % 95.04 % ORF
3. retro_alyr_3 74.88 % 99.06 % ORF
4. retro_alyr_4 79.09 % 90.79 % ORF
5. retro_alyr_5 60.37 % 99.38 % ORF
6. retro_alyr_6 83.83 % 100.00 % ORF
7. retro_alyr_7 90.29 % 96.26 % ORF
8. retro_alyr_8 63.33 % 94.74 % ORF
9. retro_alyr_9 54.80 % 73.46 % ORF
10. retro_alyr_10 77.08 % 61.76 % ORF
11. retro_alyr_11 53.24 % 96.48 % ORF
12. retro_alyr_12 64.54 % 92.28 % ORF
13. retro_alyr_13 73.41 % 68.01 % ORF
14. retro_alyr_14 53.15 % 86.50 % ORF
15. retro_alyr_15 50.74 % 93.56 % ORF
16. retro_alyr_16 73.56 % 100.00 % ORF
17. retro_alyr_17 74.34 % 100.00 % ORF
18. retro_alyr_18 89.35 % 100.00 % ORF
19. retro_alyr_19 70.00 % 75.85 % ORF
20. retro_alyr_20 67.06 % 99.71 % ORF
21. retro_alyr_21 77.86 % 70.92 % ORF
22. retro_alyr_22 55.00 % 82.19 % ORF
23. retro_alyr_23 100.00 % 100.00 % ORF
24. retro_alyr_24 50.13 % 97.15 % ORF
25. retro_alyr_25 52.00 % 55.56 % ORF
26. retro_alyr_26 83.53 % 100.00 % ORF
27. retro_alyr_27 52.48 % 90.79 % ORF
28. retro_alyr_28 55.19 % 88.08 % ORF
29. retro_alyr_29 65.36 % 99.28 % ORF
30. retro_alyr_30 60.00 % 74.60 % ORF
31. retro_alyr_31 60.52 % 58.94 % ORF
32. retro_alyr_32 57.89 % 53.58 % ORF
33. retro_alyr_36 53.19 % 79.89 % ORF
34. retro_alyr_39 74.12 % 77.27 % ORF
# Ensembl ID Symbol Description
1. fgenesh2_kg.3__1630__AT3G15020.2 mMDH2 Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D7L3Y1]
2. fgenesh1_pg.C_scaffold_2000394 Predicted protein [Source:UniProtKB/TrEMBL;Acc:D7KWQ0]
3. Al_scaffold_0005_3095 Predicted protein [Source:UniProtKB/TrEMBL;Acc:D7LSC4]
4. fgenesh2_kg.2__1800__AT1G75270.1 DHAR2
5. fgenesh2_kg.7__854__AT4G32840.1 PFK6 Phosphofructokinase family protein [Source:UniProtKB/TrEMBL;Acc:D7M9N6]
6. fgenesh2_kg.1__2738__AT1G26340.1 B5 #6 B5 #6 [Source:UniProtKB/TrEMBL;Acc:D7KQR5]
7. fgenesh1_pg.C_scaffold_5000340 Predicted protein [Source:UniProtKB/TrEMBL;Acc:D7LQW2]
8. scaffold_803473.1 Maf family protein [Source:UniProtKB/TrEMBL;Acc:D7MMF8]
9. scaffold_802017.1 GPT1 Glucose-6-phosphate transporter 1 [Source:UniProtKB/TrEMBL;Acc:D7MUW4]
10. scaffold_800035.1
11. Al_scaffold_0007_2598 Predicted protein [Source:UniProtKB/TrEMBL;Acc:D7M9W1]
12. fgenesh2_kg.1__2288__AT1G20960.1 EMB1507 [Source:UniProtKB/TrEMBL;Acc:D7KJW4]
13. fgenesh1_pm.C_scaffold_2001978 Lactoylglutathione lyase family protein [Source:UniProtKB/TrEMBL;Acc:D7KX86]
14. fgenesh2_kg.1__358__AT1G04270.1 RPS15
15. fgenesh2_kg.6__3062__AT4G10850.1 SWEET7 Nodulin MtN3 family protein [Source:UniProtKB/TrEMBL;Acc:D7LYT4]
16. fgenesh1_pm.C_scaffold_7000531 ATARI1 IBR domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D7MF22]
17. scaffold_403747.1 Universal stress protein family protein [Source:UniProtKB/TrEMBL;Acc:D7LHB6]
18. scaffold_202963.1
19. fgenesh2_kg.1__4381__AT1G53080.1
20. fgenesh1_pg.C_scaffold_6000712
21. scaffold_403368.1 BGLU15 Glycosyl hydrolase family 1 protein [Source:UniProtKB/TrEMBL;Acc:D7LLL7]
22. fgenesh2_kg.3__159__AT3G02230.1 RGP1
23. fgenesh2_kg.3__2360__AT3G21380.1
24. fgenesh2_kg.7__1515__AT4G27130.1
25. fgenesh2_kg.7__814__AT4G33070.1
26. fgenesh2_kg.3__818__AT3G07800.1 Thymidine kinase [Source:UniProtKB/TrEMBL;Acc:D7L717]
27. Al_scaffold_0001_1541 PCR2 Predicted protein [Source:UniProtKB/TrEMBL;Acc:D7KCK5]
28. scaffold_200850.1 Glycosyl hydrolase family 17 protein [Source:UniProtKB/TrEMBL;Acc:D7KYQ4]
29. fgenesh2_kg.2__836__AT1G65980.1 TPX1 Thioredoxin-dependent peroxidase 1 [Source:UniProtKB/TrEMBL;Acc:D7KT32]
30. Al_scaffold_0001_2882 Tetratricopeptide repeat (TPR)-like superfamily protein [Source:Projected from Arabidopsis thaliana (AT1G28020) TAIR;Acc:AT1G28020]
31. fgenesh2_kg.7__793__AT4G33270.1 CDC20.1 [Source:UniProtKB/TrEMBL;Acc:D7M8S7]
32. scaffold_600253.1
33. scaffold_503053.1 MBF1B ATMBF1B/MBF1B [Source:UniProtKB/TrEMBL;Acc:D7LW64]
34. fgenesh2_kg.2__1763__AT1G74950.1 JAZ2
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)