RetrogeneDB ID: | retro_alyr_19 | ||
Retrocopylocation | Organism: | Lyre-leaved rock-cress (Arabidopsis lyrata) | |
Coordinates: | 6:9810516..9811362(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | scaffold_602371.1 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | fgenesh2_kg.3__818__AT3G07800.1 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70. % |
Parental protein coverage: | 75.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GAIHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTRYAKDSVVTHDGIGFPCWALPDLMSFPEK |
G.IHV..GPMFSGK.T.LLRRI..E...G...A..KS.KDTRY...S.VTHDG..FPCW.LPDL.SF.E. | |
Retrocopy | GEIHVVVGPMFSGKTTTLLRRILAEKETGKQIAIIKSNKDTRYCTESIVTHDGEKFPCWSLPDLSSFKER |
Parental | FGQDAY-NKLDVIGIDEAQFFGDLYEFCCKVADDDGKTVIVAGLDGDYLRRSFGAVLDIIPIADSVTKLT |
FG.D.Y.N.LDVIGIDEAQFFGDLYEFC...AD..GKTVIVAGLDGD..RR.FG.VLD.IPIAD.VTKLT | |
Retrocopy | FGFDEYENRLDVIGIDEAQFFGDLYEFCRQAADREGKTVIVAGLDGDFKRRRFGSVLDLIPIADTVTKLT |
Parental | ARCEVCGHKAFFTLRKNCDTRTELIGGADVYMPVCRKHYI |
.RCEVCG..A.FT.RK.....TELIGGA.VYMPVCR.HY. | |
Retrocopy | SRCEVCGKRALFTMRKTEEKETELIGGAEVYMPVCRSHYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Arabidopsis thaliana | AT3G07800 | 1 retrocopy | |
Brassica oleracea | Bo3g061430 | 1 retrocopy | |
Brassica rapa | Bra001266 | 1 retrocopy | |
Arabidopsis lyrata | fgenesh2_kg.3__818__AT3G07800.1 | 1 retrocopy |
retro_alyr_19 ,
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