>retro_alyr_3
ATGGGGATTGAAGTCTGCGTGAAGGCCGCTTCAGGTGCACCTGATGTTCTTGGTGATTGCCCTTTTAGTCAAAAGATTCT
TCTCACTCTCGAGGAGAAGAAGCTTCCTTACAAAACTCATCTCATTGACGTTTCTCTCAAACCGGATTGGTTCTTGGCTA
TTAGTCCCAAGGGAAAACTTCCATTGATGAAGTTCGACGACAATGACGAGTGGGTGGCTGATTCTGATCTCATAGTGGGA
ATCATCGAGGAGAAATATCCGGACCCTTCCCTCGTGACGTTTCCTCCTGAATATGCCTCTGTGGGCTCCAAGATCATTGG
TGCTTTTGTGATGTTTTTGACGAGCAAAGATCATGCGAATGATGGGTCCGACATGGCTTTGTTGGATGAACTTGAGGCGT
TGGACCATCACCTCAGGACTCACGTTGGTCCTTTTGTGGCTGGCGATAAAGTCACGGCCGTGGATTTGAGCCTAGCGCCA
AAGCTTTACCATCTAGAGACTACCTTAGGACATTTCAAGGATTGGTATGTCCCTGAGAGTCTAACCAATGTTCGAAATTA
CATGAAGGTGTTGTTCTCTCTTGAGTCTTTTGAGAAAACTAAGGCTGCCAAAGAATATGTGATTGCGGGTTGGGCTCCTA
AGCTCGACGTGTGA
ORF - retro_alyr_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.88 % |
Parental protein coverage: |
99.06 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MALDICVKVAVGAPDVLGDCPFSQRVLLTLEEKKLPYKTHLINVSDKPQWFLDISPEGKVPVVKLDG--K |
| M....CVK.A.GAPDVLGDCPFSQ..LLTLEEKKLPYKTHLI.VS.KP.WFL.ISP.GK.P..K.D.... |
Retrocopy | MGIEVCVKAASGAPDVLGDCPFSQKILLTLEEKKLPYKTHLIDVSLKPDWFLAISPKGKLPLMKFDDNDE |
|
Parental | WVADSDVIVGLLEEKYPEPSLKT-PPEFASVGSKIFGAFVTFLKSKD-ANDGSEKALVDELEALENHLKT |
| WVADSD.IVG..EEKYP.PSL.T.PPE.ASVGSKI.GAFV.FL.SKD.ANDGS..AL.DELEAL..HL.T |
Retrocopy | WVADSDLIVGIIEEKYPDPSLVTFPPEYASVGSKIIGAFVMFLTSKDHANDGSDMALLDELEALDHHLRT |
|
Parental | HSGPFVAGEKVTAVDLSLAPKLYHLEVALGHYKNWSVPESLTNVRNYAKALFSRESFEKTKAKKEIVVAG |
| H.GPFVAG.KVTAVDLSLAPKLYHLE..LGH.K.W.VPESLTNVRNY.K.LFS.ESFEKTKA.KE.V.AG |
Retrocopy | HVGPFVAGDKVTAVDLSLAPKLYHLETTLGHFKDWYVPESLTNVRNYMKVLFSLESFEKTKAAKEYVIAG |
|
Parental | WESKV |
| W..K. |
Retrocopy | WAPKL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis lyrata was not studied using RNA-Seq expression data.
Arabidopsis lyrata was not studied using ChIP-Seq data.
Arabidopsis lyrata was not studied using EST data.
Arabidopsis lyrata was not studied using FANTOM5 data.
retro_alyr_3 was not experimentally validated.
Retrocopy orthology:
Arabidopsis lyrata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.