>retro_alyr_30
ATGAGTTTATTCCCTTGTGAAGCTTCAAACATGGATTATATGGCAGCACCAGTTCAAGATGTTAAACCGACGAATTTGTT
TCCACGGCAACTAAGTTTTTCTTCCTCATCTTCCTCTGTTCCAAAGGAAGATGTTCTGAAAATGACACAGACTACCAGAT
CTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCTACGCCGGGCAAGTGATTGTATTCAATGACTTTTCTGCT
GAGAAAGCCAAAGAAGTGATGAACTTGGCTAGCAAAGGCACAGCTAATAGCTTCACCGGTTTCACATCTAATGTCATCTT
AGCCAAGAATCAAAGCGAGATCAGAAGCAACATCGCTACCATCACAAACCAAGTTCCTCATCCAAGAAAAACCCCAACAC
AAGAGCCAATCCAATCCTCCCCAACACCACTGACAGAACTTCCTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAG
AAGAGAAAGGACAGAGTTACGTCAAAGGCACCATACCAATTATGCGATCCAGCCAAAGCGTCTTCAAAGCCTCAAACCGC
AGACAACATGTCCTGGCTCGGTTTGGCAGCTGAAATATGA
ORF - retro_alyr_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60. % |
Parental protein coverage: |
74.6 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MNLFPCEASGMDSSAA--QDIKPKNVFPRQSSFSSSSCSSGAKEDVHMIKETKSVKPESQSAPLTIFYAG |
| M.LFPCEAS.MD..AA..QD.KP.N.FPRQ.SFSSSS.S........M...T.SVKPESQ.APLTIFYAG |
Retrocopy | MSLFPCEASNMDYMAAPVQDVKPTNLFPRQLSFSSSSSSVPKEDVLKMTQTTRSVKPESQTAPLTIFYAG |
|
Parental | RVMVFDDFSAEKAKQVIDLANKGSSKGFTAEVNNSQSAYSQHLAKTQKEIASSPNPVYSPAKTAAQESIQ |
| .V.VF.DFSAEKAK.V..LA.KG....FT....N...A..Q........IA...N.V..P.KT..QE.IQ |
Retrocopy | QVIVFNDFSAEKAKEVMNLASKGTANSFTGFTSNVILAKNQ--SEIRSNIATITNQVPHPRKTPTQEPIQ |
|
Parental | PNPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPNPA |
| ..P..L..ELPIARRASLHRFLEKRKDR.TSKAPYQ....A.ASSKP..A |
Retrocopy | SSPTPLT-ELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSKPQTA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis lyrata was not studied using RNA-Seq expression data.
Arabidopsis lyrata was not studied using ChIP-Seq data.
Arabidopsis lyrata was not studied using EST data.
Arabidopsis lyrata was not studied using FANTOM5 data.
retro_alyr_30 was not experimentally validated.
Retrocopy orthology:
Arabidopsis lyrata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.