>retro_alyr_31
CAGGTGTATATAATAGGAGGAGACGGCACAATGCGTGGGGCTGTCGAGATCTTCAAGGAAATCAGCCTCAGGAAACTGGA
GGTGGGAATCACAGGTATTCCCAAAACCGTGGACAACGATGTCGGCATCATTGATAGATCATTCGGCTTTCAAACGGCTG
TAGAGATGGCTCAGCAGGCTATATCTGCTGCTCACGTGGAGGCCGAGAGCGCAGTCAATGGCATTGGACTTGTGAAGCTT
ATGGGCAGAAGTACTGGCCACATTGCTCTACATGCCACTCTTAGCAGCCGTGATGTGGACTGTTGTTTGATCCCTGAGAT
GGACTTCTACCTTGAAGGCAAAGGTGGGCTCTTTGAGTTTCTGGAGAAAAGACTTAAAGAACGCGGGCATGCTGTTCTTG
TTGTGGCTGAAGGGGCAGGCCAAGAGATGATCCCAAGAAATGAATCACAGAAACAAGAGAGGGATGAATCTGGCAACCCT
GTTTTCTTGGATGTCGGAGTCTGGTTTAAGTCAGTGCTCAAGGACTGGTGGGGCCGAGAGCATCCAGACGAGCTCTTCAC
CGTCAAGTATATCGATCCCACTTACATGATAAGAGCTGTACCTGCAAATGCTACGGACAACTTGTATTGTACACTCTTGG
CCCACTCGGCCATCCATGGAGTCATGGCTGGTTACACAGGGTTCGTGCCTGGCCCAATCAATGGGAACTATGCTTATATC
CCCTTAGAGGAGGTGGCACTGACTAAGAACAAAGTTAACACGAGTGACCACAAGTGGGCGTGGGTGCGCTCAGTCACAAA
CCAGCCTGATTTT
ORF - retro_alyr_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.52 % |
Parental protein coverage: |
58.94 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | QVYIIGGDGTQKGASAIYKEIRRRGLKVSVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEANS |
| QVYIIGGDGT..GA..I.KEI..R.L.V...GIPKT.DND...ID.SFGF.TAVE.AQ.AI.AAHVEA.S |
Retrocopy | QVYIIGGDGTMRGAVEIFKEISLRKLEVGITGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAES |
|
Parental | VENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLYEFIAKRLRENGHMVIVIAEGAG |
| ..NGIGLVKLMGR..G.IA..ATL.SRDVDCCLIPE..FYLEGKGGL.EF..KRL.E.GH.V.V.AEGAG |
Retrocopy | AVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMDFYLEGKGGLFEFLEKRLKERGHAVLVVAEGAG |
|
Parental | QDLVAESTDQ---QDASGNKLLKDVGLWMSLKIKEHFAKQSVMDI-TLKYIDPTYMIRAIPANASDNVYS |
| Q........Q....D.SGN....DVG.W.....K............T.KYIDPTYMIRA.PANA.DN.Y. |
Retrocopy | QEMIPRNESQKQERDESGNPVFLDVGVWFKSVLKDWWGREHPDELFTVKYIDPTYMIRAVPANATDNLYC |
|
Parental | TLLAQSAVHGAMAGYTGFVSGLVNGRHTYIPFNRITERQNKVVITDRMWARMLSSTNQPSF |
| TLLA.SA.HG.MAGYTGFV.G..NG...YIP........NKV...D..WA...S.TNQP.F |
Retrocopy | TLLAHSAIHGVMAGYTGFVPGPINGNYAYIPLEEVALTKNKVNTSDHKWAWVRSVTNQPDF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis lyrata was not studied using RNA-Seq expression data.
Arabidopsis lyrata was not studied using ChIP-Seq data.
Arabidopsis lyrata was not studied using EST data.
Arabidopsis lyrata was not studied using FANTOM5 data.
retro_alyr_31 was not experimentally validated.
Retrocopy orthology:
Arabidopsis lyrata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.