>retro_alyr_7
ATGGCCAAGAAGGCGATGGAGAAAGGATTTAAGCTGATTCTTGGTTCTCAGTCGATGGCAAGAAAGCAGATTCTGGCTGA
AATGGGCTATGATTTCACTATTGTGACTGCAGACATTGATGAGAAAGCTATTAGGAAAGAGAAGCCTGAAGATTTGGTTG
TGGCTATTGCTGAAGCCAAAGCAAATGAGATTATATTGAAATTGGGAGGTGAAAGTCAGTTTGCACAAGATTGTCAACCA
ACTCTATTGATTACTTCAGACACTGTTGTTGTGTACAAAGGTGTCATCAGAGAAAAACCAACCAGTAAAGAAGAAGCTCG
CGAGTTTATCAAAGGCTATTCCGGGTCACATGGGGGCGTTGTGGGATCTGTTCTTGTGAGAAACTTGAAAACTGGAGTTA
GAAGAGGAGGATGGGACAAAGCAGAGGTTTATTTCCATGAGATACCAGAACATGTCATCGACGATCTTATTGATGATTCA
ATAACTTTCAAGGTTGCTGGAGGTTTAATGCTTGAGCATCCCCTCATTTCACCTTTTATCGATTCCGTGGTGGGAGGCGT
TGATACAGTCATGGGACTTCCTAAAGAACTTACTGAAAAATTCATTAACGATGTTTTGTAG
ORF - retro_alyr_7 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.29 % |
Parental protein coverage: |
96.26 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MTTKAMQRGFKLILGSQSMARKRILADMGYDYTIVTADIDEKAIRTEKPEDLVVALAEAKANEIISKLGG |
| M..KAM..GFKLILGSQSMARK.ILA.MGYD.TIVTADIDEKAIR.EKPEDLVVA.AEAKANEII.KLGG |
Retrocopy | MAKKAMEKGFKLILGSQSMARKQILAEMGYDFTIVTADIDEKAIRKEKPEDLVVAIAEAKANEIILKLGG |
|
Parental | ESQFAQDPQPTLLITADTVVVYKGVIREKPTTKEEAREFIKGYSGSHGGVVGSVLVRNLKTGVRRGGWDK |
| ESQFAQD.QPTLLIT.DTVVVYKGVIREKPT.KEEAREFIKGYSGSHGGVVGSVLVRNLKTGVRRGGWDK |
Retrocopy | ESQFAQDCQPTLLITSDTVVVYKGVIREKPTSKEEAREFIKGYSGSHGGVVGSVLVRNLKTGVRRGGWDK |
|
Parental | AEVYFHEIPEQIIDDLIDDAITYKVAGGLTLEHPLISPFIDAVVGGVDTVMGLPKELTEKCINDVL |
| AEVYFHEIPE..IDDLIDD.IT.KVAGGL.LEHPLISPFID.VVGGVDTVMGLPKELTEK.INDVL |
Retrocopy | AEVYFHEIPEHVIDDLIDDSITFKVAGGLMLEHPLISPFIDSVVGGVDTVMGLPKELTEKFINDVL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis lyrata was not studied using RNA-Seq expression data.
Arabidopsis lyrata was not studied using ChIP-Seq data.
Arabidopsis lyrata was not studied using EST data.
Arabidopsis lyrata was not studied using FANTOM5 data.
retro_alyr_7 was not experimentally validated.
Retrocopy orthology:
Arabidopsis lyrata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.