RetrogeneDB ID: | retro_amel_1088 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192894.1:635272..635608(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF10 | ||
Ensembl ID: | ENSAMEG00000016278 | ||
Aliases: | None | ||
Description: | TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa [Source:HGNC Symbol;Acc:11543] |
Percent Identity: | 55.36 % |
Parental protein coverage: | 57.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PAPVSAGGAAPLEGAMSNGVYVLPSAANGDVKPVVSSTPLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEA |
P.P........L..A.SN..Y.LPS.AN...K..V.S.PL.D....LE.YT..IPD.VTGY.LN.AGF.A | |
Retrocopy | PGPHPCNAYPHLGWALSNRLYILPSIANKALKLEVFSKPLADSQV*LENYTLKIPDTVTGYTLNQAGFGA |
Parental | SDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKS |
S.P.II.L.SL.AQKFISDI..D.L.HCK.K.TASG..R..S | |
Retrocopy | SNPSIIWLVSLDAQKFISDISDDVL*HCKIKITASGKERNAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016278 | 2 retrocopies |
retro_amel_1088 , retro_amel_297,
|
Dasypus novemcinctus | ENSDNOG00000000814 | 1 retrocopy | |
Equus caballus | ENSECAG00000007794 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008886 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000029330 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024459 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007743 | 1 retrocopy | |
Mus musculus | ENSMUSG00000043866 | 1 retrocopy |