RetrogeneDB ID:

retro_mluc_1960

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429963:2147190..2147606(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000023561
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000024459
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1960
GTTGAGTGGCACTGGGTGGCTCCAGTGTCCTGTGCCAAATCTAATGAGGTTAATGTGCTGCCAAGTACAGGCAATGGAAA
CATGAAGCCGGTGGTGTTCAGTACGCCTCTGGTGGACTTCCTGATGCAGCTGGAGTATTACATGCCTACAATCCTAGTGC
AGTGACTGGTTACTACCTGGACCCTGCTGGCTTTGAGACCTCAGATCCTTGCATAACTTGGCTCATCTCCCTAGCTGCTC
AGAAATTCATCTCAGATATTGTCAATGATGCACTACAGCAATGCAAAATGAAGGGTACAGCCTTTGGCAGCTCCCAAAGC
AAGAGCAAGGACCACAGGTACACTCTCACCATGGAGGACTTGACCCCTGCCCTCAATGAGTATGGCATCCATGTAAAGAA
GCCACACTATTTCACC

ORF - retro_mluc_1960 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.5 %
Parental protein coverage: 96.53 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVEGGRAGPMSPNMSNGVYVLPSAAT-DVKPVVSSTPLVDFLMQLEDYTPTI-PDAGTGYYLNRAGFEASD
VE.....P.S...SN.V.VLPS......KPVV.STPLVDFLMQLE.Y.PTI.P.A.TGYYL..AGFE.SD
RetrocopyVEWHWVAPVSCAKSNEVNVLPSTGNGNMKPVVFSTPLVDFLMQLEYYMPTI<PSAVTGYYLDPAGFETSD
ParentalPRILNRLISLAAPKFISDIANDALQHCKMKGTASGSSRSKSKDRKYTLTMEDLTPALSEYGINVKNLHEL
P.I...LISLAA.KFISDI.NDALQ.CKMKGTA.GSS.SKSKD..YTLTMEDLTPAL.EYGI.VK..H..
RetrocopyPCI-TWLISLAAQKFISDIVNDALQQCKMKGTAFGSSQSKSKDHRYTLTMEDLTPALNEYGIHVKKPHYF
ParentalT
T
RetrocopyT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1960 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000162782 retrocopies
Canis familiaris ENSCAFG000000064982 retrocopies
Dasypus novemcinctus ENSDNOG000000008141 retrocopy
Equus caballus ENSECAG000000077941 retrocopy
Erinaceus europaeus ENSEEUG000000084123 retrocopies
Echinops telfairi ENSETEG000000088861 retrocopy
Felis catus ENSFCAG000000153901 retrocopy
Loxodonta africana ENSLAFG000000293301 retrocopy
Macropus eugenii ENSMEUG000000082162 retrocopies
Myotis lucifugus ENSMLUG00000024459 1 retrocopy
retro_mluc_1960 ,
Macaca mulatta ENSMMUG000000077431 retrocopy
Mus musculus ENSMUSG000000438661 retrocopy
Tursiops truncatus ENSTTRG000000048941 retrocopy



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