RetrogeneDB ID: | retro_amel_1255 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193110.1:863871..864242(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM216 | ||
Ensembl ID: | ENSAMEG00000016592 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.95 % |
Parental protein coverage: | 74.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LEILFFLNGWYYATYFLLELFLFLYKAALLLPYPTANLVLDVVMLLLYLGIEVIRLFFGTKGNLCQRKMP |
LEILFFLN.WYY.T.FL.ELF.FLY.A.LLLPYP.ANLV.DVVMLLLYLG.E.I.LFFGTKGNLCQ.KMP | |
Retrocopy | LEILFFLNRWYYVTCFLQELFVFLYEA-LLLPYPKANLVIDVVMLLLYLGVEGI*LFFGTKGNLCQQKMP |
Parental | LGISVALTFPSAMMASYYLLLQTYVLRLEAIMNGL-LFF-CGSELLLEVLTLTAFS |
LG...ALTFPSA.M.SYYL.LQTYVLRLEAIMNG..L.F.CGSELLL.VLTLTAFS | |
Retrocopy | LGVNMALTFPSARMTSYYLPLQTYVLRLEAIMNGI<LLFFCGSELLLGVLTLTAFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016592 | 1 retrocopy |
retro_amel_1255 ,
|
Bos taurus | ENSBTAG00000021517 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016171 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000020362 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014169 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001682 | 1 retrocopy |