RetrogeneDB ID: | retro_amel_1320 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL193193.1:398041..398355(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSAMEG00000001122 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_amel_1320
AGAGAGCCAAGCATTGGCACTGGCCATGCTAAGATTGGCCAATGCCTTGAAGTTCTTCTCTTCCTCTGTAAAGACTCTGG
TTTTCTCCTTCTTATAGACATTTGGCAAGCGCGGGCTGGTCCTGTCAGCTTTGTAGCCAATTTGAGTTCTTCAGCAGAGC
TGTTTTCTTTCTTGGGGGCTGAGAGCTTCCTGGGGAAGGGGTGAGCTTGGAGTAGTACTCCTTCTGCCATGGCACACTGG
CCTGCATGGACTCTGTGAACTTGTTCTACCTTCTTGGATCCACTGAGATCCCAATGGTCCATGCCACCTTCTTG
ORF - retro_amel_1320 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.87 % |
| Parental protein coverage: | 99.03 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KEPGIGTGHAKTGECLKVLLLLCDDSGFLLTFRM--GMTGPVSWVANLSSSA-LSPFLGAEGFLGKR-MS |
| .EP.IGTGHAK.G.CL.VLL.LC.DSGFLL.........GPVS.VANLSSSA.L..FLGAE.FLGK...S | |
| Retrocopy | REPSIGTGHAKIGQCLEVLLFLCKDSGFLLLIDIWQARAGPVSFVANLSSSAELFSFLGAESFLGKG<VS |
| Parental | LERYSFSRCTLACRDSVDLFRRLGSTEIPMVRATFL |
| LE.YSF...TLAC.DSV.LF..LGSTEIPMV.ATFL | |
| Retrocopy | LE*YSFCHGTLACMDSVNLFYLLGSTEIPMVHATFL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1320 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1320 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001122 | 3 retrocopies |
retro_amel_1320 , retro_amel_1608, retro_amel_183,
|