RetrogeneDB ID: | retro_amel_183 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL192348.1:5025934..5026236(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSAMEG00000001122 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_amel_183
GCCAAAGAGCCAGGCATTGGCATGGGCCATGGGAAGACTAGCCAATGCCTTAAAGTTCTTTGTAACGACTTGGCGTTCTC
CTTCTATAGACATGCAATATGGGTGTGATCGATCCTGTCATCTGGGCAGCCAATGTGAGTTCTTCGGCAGAGCAGCCTCC
CTCTCTGGGGGCCCAGGGCTTCCTGGGAAAGAGGATGAGCCTGGAGCAGTGCTCCCTCAGCCACTGCCTGTTGGCCTGCA
GGGGCTCCATGGACTTCCTCCATCTTCTTGGATCCACTGAGATCTCAGTGGTCCAGGCCAGC
ORF - retro_amel_183 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.95 % |
| Parental protein coverage: | 98.06 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | AKEPGIGTGHAKTGECLKVLLLLCDDS-GFLL--TFRMGMTGPVSWVANLSSSALSP-FLGAEGFLGKRM |
| AKEPGIG.GH.KT..CLKV...LC.D..G.LL..T..MG...PV.W.AN.SSSA..P..LGA.GFLGKRM | |
| Retrocopy | AKEPGIGMGHGKTSQCLKV---LCNDL<GVLLL*TCNMGVIDPVIWAANVSSSAEQPPSLGAQGFLGKRM |
| Parental | SLERYSFSRCTLACRDSVDLFRRLGSTEIPMVRAT |
| SLE..S.S.C.LACR.S.D....LGSTEI..V.A. | |
| Retrocopy | SLEQCSLSHCLLACRGSMDFLHLLGSTEISVVQAS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_183 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_183 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001122 | 3 retrocopies |
retro_amel_1320, retro_amel_1608, retro_amel_183 ,
|