RetrogeneDB ID: | retro_amel_140 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192338.1:4413034..4413489(-) | ||
Located in intron of: | ENSAMEG00000017346 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORMDL2 | ||
Ensembl ID: | ENSAMEG00000003047 | ||
Aliases: | None | ||
Description: | ORM1-like 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:16037] |
Percent Identity: | 81.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MNVGVAHSEVNPNTRVMNSQGTWLAYIILVGLLHAVRLSIRFFSIPVVWTLTNVIHNLAMYVFLHTVKGT |
MNV.VAHS.V.PNT.VMNSQG.WLAYI.LVG..H.V.LSI.F..IP..WTLTNVIHNLAMYV...TVKGT | |
Retrocopy | MNVRVAHSKVTPNTQVMNSQGIWLAYIVLVGPSH-VLLSIPFYRIPGIWTLTNVIHNLAMYVIFYTVKGT |
Parental | PFETPDQGKARLLTHW-QQMDYRLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFFINTASLLSVLLPKL |
PFETPDQGKA.LLTHW..QMDYRLQFTSS.KFLSISPIVL.LLASFYT.YDAAHF.INTASLLS.LLPKL | |
Retrocopy | PFETPDQGKAWLLTHW<EQMDYRLQFTSSCKFLSISPIVLFLLASFYTEYDAAHFLINTASLLSILLPKL |
Parental | PQFHGVRLFGINKY |
PQFHGV..FG.NKY | |
Retrocopy | PQFHGVHVFGLNKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003047 | 2 retrocopies |
retro_amel_140 , retro_amel_735,
|
Choloepus hoffmanni | ENSCHOG00000009601 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015224 | 1 retrocopy | |
Felis catus | ENSFCAG00000013964 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014896 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010920 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003575 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006292 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000911 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025353 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001695 | 2 retrocopies |