RetrogeneDB ID: retro_amel_1493

Retrocopy location

• Organism: Panda (Ailuropoda melanoleuca)
• Coordinates: GL193493.1:200288..200453(+)
• Located in intron of: ENSAMEG00000004068

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KRTAP20-1
• Ensembl ID: ENSAMEG00000004068
• Aliases: None
• Description: None

Sequence

>retro_amel_1493
ATGTGTGGCGGCTACTACGGAAACTCCTGCGGGGGCTGCGGCTATGGAGGCTGCGGCTATGGAGGCTGTGGCTATGGAGG
CTGTGGCTACGGAGGCTGCGGTTATGGAGGCTATGGTTATGGAGGCCTGGGCTGTGGCTATGGCTCCAGCTATGGCTGTG
GCTTC

Alignment

ORF - retro_amel_1493 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.35 %
• Parental protein coverage: 89.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MCGSYYGNSCGGCGYGGCGYGGCGYGYGGL-GCGYGSSYGCGFRRLGCGYGYGSRSLCGCGY
          MCG.YYGNSCGGCGYGGCGYGGCGYG..G..GCGYG...G.G...LGCGYG....S..GCG.
Retrocopy MCGGYYGNSCGGCGYGGCGYGGCGYGGCGYGGCGYG---GYGYGGLGCGYG----SSYGCGF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq

Ailuropoda melanoleuca was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_amel_1493 retrocopy.

TSS

Ailuropoda melanoleuca was not studied using FANTOM5 data.

Lab

retro_amel_1493 was not experimentally validated.

Homology

Retrocopy orthology:

Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004068	2 retrocopies	retro_amel_1493 , retro_amel_1494,