RetrogeneDB ID: | retro_amel_1494 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL193493.1:399171..399366(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | KRTAP20-1 | ||
| Ensembl ID: | ENSAMEG00000004068 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_amel_1494
GGCAACTACTACGGAGGCCTGGGCTATGGCTGTGGAAGTTTTGGTGGCCTAGGCTGTGGCCGTGTCTGGGGATGTGGCAG
CGGCTGGGGATGTGGTGGCTTCCGCAGAAGGGGCTGTGGCTGGGGTTGGGGAGGCTGCAGATACGGCTGCTGCCGCCCAT
CTTGCTATGGAAGATATGGATTCTCTGGCTTCTAC
ORF - retro_amel_1494 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.86 % |
| Parental protein coverage: | 97.1 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GSYYGNSCGGCGCGYGGLGCGYGSSYGCGLGYGYSGL---GCGYGCGYGSYGYGSCCPSCYGRYWSYGFY |
| G.YYG....GCG...GGLGCG.....GCG.G.G..G....GCG.G...G...YG.C.PSCYGRY...GFY | |
| Retrocopy | GNYYGGLGYGCG-SFGGLGCG--RVWGCGSGWGCGGFRRRGCGWG--WGGCRYGCCRPSCYGRYGFSGFY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1494 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1494 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004068 | 2 retrocopies |
retro_amel_1493, retro_amel_1494 ,
|