RetrogeneDB ID: | retro_amel_1698 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193996.1:87948..88413(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1A | ||
Ensembl ID: | ENSAMEG00000017868 | ||
Aliases: | None | ||
Description: | SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] |
Percent Identity: | 71.07 % |
Parental protein coverage: | 78.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | HMLKDDRLGQHVPTLHPTSEELTIAGM-TFTT-FDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLME |
H....D.LGQHV.TL..TSEEL.IA.M..FTT.FDLGGHEQA.RVWK.YLPAIN.IV.LVDCA.HP.LME | |
Retrocopy | HTQWSD*LGQHVSTLDLTSEELKIARM<AFTT<FDLGGHEQAHRVWKTYLPAINRIVILVDCAGHPHLME |
Parental | SKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFM-CS |
....LNALMT.ETI.NVPI.ILGNK.D..DAISEEKL.EIFGLYG.TTGK.NVTL.ELNA.P..V...CS | |
Retrocopy | TTLGLNALMTEETIPNVPIHILGNKNDKADAISEEKLHEIFGLYGLTTGKENVTLRELNACPKGVLL<CS |
Parental | VLKRQGYGEGFRWLSQYID |
.L..QGY..GF.WLSQ.ID | |
Retrocopy | ALEKQGYDKGFHWLSQ*ID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017849 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000017868 | 1 retrocopy |
retro_amel_1698 ,
|
Gorilla gorilla | ENSGGOG00000024879 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000004338 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004547 | 1 retrocopy |