RetrogeneDB ID: | retro_amel_596 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL192518.1:897638..897977(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FRZB | ||
| Ensembl ID: | ENSAMEG00000009717 | ||
| Aliases: | None | ||
| Description: | frizzled-related protein [Source:HGNC Symbol;Acc:3959] |
Retrocopy-Parental alignment summary:
>retro_amel_596
ATTAAACTTATTCAGAGGACCTAGCTCCGAAACAATTATAACTATGTCATTCAGGGAGGCTAAAGGTAAGAGGTCAAGAG
CAAATGTCATGGTGTGACTGCAGTAGTTGAGGTGAAGGAAATTCTGAGGGCTTCTCTAATAGACATTCCAAGCACACCAT
TAACCTTTGCACCAATTCTGGCTGCCTGTGTCCTCGTTCATATTAATGAGGTTATAGGTTATGAAGGTGAGTGATGTTCC
AGATTAGCCTTAGTGGAAAGTAATATTGCTGAGAAATGGAAGGATCAACTTTATAAAAAAGTTAAGCCCTGGGATATGAA
GCTCTGTCATCTTAGAGTA
ORF - retro_amel_596 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.99 % |
| Parental protein coverage: | 76.82 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | IRATQKIYFRNNYNYVIRAKVK-EVKTKCHDVTVVVEVKEILKASLVNIPRDTINIYTSSGCLCPPLNVN |
| I...Q....RNNYNYVI......EVK.KCH.VT.VVEVKEIL.ASL..IP.............C.....N | |
| Retrocopy | IKLIQRT*LRNNYNYVIQGG*R*EVKSKCHGVTAVVEVKEILRASLIDIPSTPLT-FAPILAACVLVHIN |
| Parental | EEYIIMGYEDEERSRLLLVEGSIAEKWKDRLGKKVKRWDMKVRHLEL |
| E.....GYE.E..SRL.LVE..IAEKWKD.L.KKVK.WDMK..HL.. | |
| Retrocopy | E---VIGYEGE*CSRLALVESNIAEKWKDQLYKKVKPWDMKLCHLRV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_596 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_596 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009717 | 1 retrocopy |
retro_amel_596 ,
|
| Canis familiaris | ENSCAFG00000024988 | 1 retrocopy |