RetrogeneDB ID: | retro_cfam_1243 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 27:20300740..20300995(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FRZB | ||
| Ensembl ID: | ENSCAFG00000024988 | ||
| Aliases: | None | ||
| Description: | frizzled-related protein [Source:HGNC Symbol;Acc:3959] |
Retrocopy-Parental alignment summary:
>retro_cfam_1243
AATTTTCCTATGGATCCTAGTAATGGAAACCGTAGAGGAGCCAGCAGTGAATGCTGCAAACGTAAACCTCTTAGGGCCAT
GCAGAAGACCTAGTTCCAAAACAACTATGTCATTCAGGCAGGCTGAAGTTAAGAGCTAAAGGCCAGATGCCATGGCATGG
CTGCAGTAGTGGAGGTGAAGGAGATTCTAAAGGCTTCTAGTAAACATTCCAAGCACACCATTAATCTTTACACCAAGTCT
GGCTGCCTACGTCCT
ORF - retro_cfam_1243 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.23 % |
| Parental protein coverage: | 52.1 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DFPMDSSNGNCRGTSSERCKCKPVRATQKTYFRNNYNYVIRAKVK-EIKTKCHDVTVVIEVKEILKASLV |
| .FPMD.SNGN.RG.SSE.CK.KP.RA.QKT.F.NN..YVI.A....E.K..CH....V.EVKEILKAS.. | |
| Retrocopy | NFPMDPSNGNRRGASSECCKRKPLRAMQKT*FQNN--YVIQAG*S*ELKARCHGMAAVVEVKEILKASSK |
| Parental | NIPRDTVNLYTSSGCLCP |
| .....T.NLYT.SGCL.P | |
| Retrocopy | H-SKHTINLYTKSGCLRP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 50 .52 RPM |
| SRP017611_brain | 0 .00 RPM | 32 .71 RPM |
| SRP017611_kidney | 0 .00 RPM | 16 .51 RPM |
| SRP017611_liver | 0 .00 RPM | 5 .66 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1243 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1243 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1243 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009717 | 1 retrocopy | |
| Canis familiaris | ENSCAFG00000024988 | 1 retrocopy |
retro_cfam_1243 ,
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