RetrogeneDB ID: | retro_amel_795 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192642.1:171580..172530(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NONO | ||
Ensembl ID: | ENSAMEG00000016057 | ||
Aliases: | None | ||
Description: | non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871] |
Percent Identity: | 74.14 % |
Parental protein coverage: | 67.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFG |
ANGQQASSQNEGLTIDLKNFRKPGEK.FTQ.S.L.VGNLPPD.TEEEM.K..EKYG.AGEVFI.KDKGFG | |
Retrocopy | ANGQQASSQNEGLTIDLKNFRKPGEKNFTQHSQLSVGNLPPDVTEEEMKKQLEKYGMAGEVFIQKDKGFG |
Parental | FIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD |
FI.LETRT..E.A.VELDN..LRGKQL.VRFACHSASLTV.NLP..VSNE.LEEAFSV.GQVERAVV.VD | |
Retrocopy | FICLETRTRGEMAEVELDNVLLRGKQLPVRFACHSASLTV*NLPWCVSNEELEEAFSVSGQVERAVVLVD |
Parental | DRGRPSGKGIVEFSGKPAARKALDRC-SEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFHKER |
DRGRPSGKG....SGKPAARKALDRC..EGSF.LTTFP.PVTVEPMDQLDDEEG.PEKLVIKNQ.FH.E. | |
Retrocopy | DRGRPSGKGTAKVSGKPAARKALDRC<HEGSFPLTTFPQPVTVEPMDQLDDEEGPPEKLVIKNQKFHEE* |
Parental | EQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQE |
EQPP..AQPGSFE.EYA..WKAL.EMEKQQQDQVDRNIKEAREKL.ME....R...Q....RQ...RR.E | |
Retrocopy | EQPPGSAQPGSFEREYATCWKALTEMEKQQQDQVDRNIKEAREKLKMELMLMR---QDLMRRQEELRRME |
Parental | ELRRMEELHNQEVQKRKQLELRQ-EEERRRREEEMRRQQEE |
EL...E.........R...E.R..EEER.R..EEMR....E | |
Retrocopy | ELHDQEVQKRKQLELRQEEERRHCEEERQRQQEEMRQRRQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |