>retro_atha_27
GATGATCATGAGTATAAGCTTATTGTGGATTGTAATAAGCTTTCGGTTGATATTGAGGATGAAATCGTTATTGTCCACAA
CTTTATCAAAGAAAAGTACAAGCTTAGGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTATGCATGTGTTG
TCAAGAAGATTGGCAATGAGACGGATTTGACTCTTGTTGATTTTGCTGGCCTTGATCTTACTCCAGCTATTATCATGGCT
ATTTCAGTTACTGCTTCAACTACGAAAGGGAGTGCACTGCCAGAGGATGTTTAGCAAAAGGTGTTAGAGGCTTGTGATCG
GGATTTAGATCTTGATTCCGCAAGAAAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGTTCTATTGCTCCTAATCTTT
CCGCCATTGTTGGGAGTGCTGTTGCAGCCAAACTCATGGGGACAGCTGGAGGTTTGTCAGCACTTGCTAAAATGCCTGCC
TGTAATGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTGTTGGGTTTTCTTCTGCAACGTCTCAGTCCCGTGTGGGTTA
TCTGGAGCAGACAGAGATTTTCCAAAGCACGCCTCCTGGACTTGAGGCTCGCGCTGGCAGGCTCGTGGCTGCAAAATCAA
CTTTGGCAGCTAGAGTTGATGCTACTAGAGAGGATCCGTTAGGGATAAGTGGAAAAGCTTTCAGGGAGGAGATCCGTAAG
AAGATTGACAAGTGGCAAGAACCTCCTCCTGCAAGGCAGCCTAAGCCACTTCCTATTCCTCATTCTGAGCCGAAGAAAAG
AAGGGGTGGTCGCCGTCTAAGAAAACTGAAAGCAAGGTATCAAGTAACAGATATGAGGAAGCTGGCCAACAGGACGGCCT
TTGGTACACCTGAAGAGAGCTCCCTCGGTGATGGACTAGGAGAAGGTTATGGAATGCTTGGACAGGCAGGAAGCAAGAGG
CTGCGAGTATCCAGTGTTCAGAGCAAGCTTAAAATTAATGCCAAGGTCGCCAAAAAGCTTAAAGAAAGGCAGTATGCGGG
TGGTGCAACTACCTCTGGTTTGACATCAAGCTTGGCTTTCACTTCTATGCAGGGAATAGAGTTGTGCAATCCTCAGCAAG
CTTTAGGATTAGGAAGTGGGGCTCAAAGCACTTCTCAGAGTCAG
ORF - retro_atha_27 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.24 % |
Parental protein coverage: |
79.79 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DDPEYKLIVDCNQLSVDIENEIVIVHNFIKDKYKLKFQELESLVHHPIDYACVVKKIGNETDLALVDLAD |
| DD.EYKLIVDCN.LSVDIE.EIVIVHNFIK.KYKL.FQELESLVHHPIDYACVVKKIGNETDL.LVD.A. |
Retrocopy | DDHEYKLIVDCNKLSVDIEDEIVIVHNFIKEKYKLRFQELESLVHHPIDYACVVKKIGNETDLTLVDFAG |
|
Parental | L-LPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNLSAIVGSA |
| L.L..AIIM..SVTA.TTKGSALPEDV.QKVLEACDR.LDLDSARKKVLEFVESKMGSIAPNLSAIVGSA |
Retrocopy | LDLTPAIIMAISVTASTTKGSALPEDV*QKVLEACDRDLDLDSARKKVLEFVESKMGSIAPNLSAIVGSA |
|
Parental | VAAKLMGTAGGLSALAKMPACNVQVLGHKRKNLAGFSSATSQSRVGYLEQTEIYQSTPPGLQARAGRLVA |
| VAAKLMGTAGGLSALAKMPACNVQVLGHKRKNL.GFSSATSQSRVGYLEQTEI.QSTPPGL.ARAGRLVA |
Retrocopy | VAAKLMGTAGGLSALAKMPACNVQVLGHKRKNLVGFSSATSQSRVGYLEQTEIFQSTPPGLEARAGRLVA |
|
Parental | AKSTLAARVDATRGDPLGISGKAFREEIRKKIEKWQEPPPARQPKPLPVPDSEPKKRRGGRRLRKMKERY |
| AKSTLAARVDATR.DPLGISGKAFREEIRKKI.KWQEPPPARQPKPLP.P.SEPKKRRGGRRLRK.K.RY |
Retrocopy | AKSTLAARVDATREDPLGISGKAFREEIRKKIDKWQEPPPARQPKPLPIPHSEPKKRRGGRRLRKLKARY |
|
Parental | QVTDMRKLANRMAFGTPEESSLGDGLGEGYGMLGQAGSNRLRVSSVPSKLKINAKVAKKLKERQYAGGAT |
| QVTDMRKLANR.AFGTPEESSLGDGLGEGYGMLGQAGS.RLRVSSV.SKLKINAKVAKKLKERQYAGGAT |
Retrocopy | QVTDMRKLANRTAFGTPEESSLGDGLGEGYGMLGQAGSKRLRVSSVQSKLKINAKVAKKLKERQYAGGAT |
|
Parental | TSGLTSSLAFTPVQGIELCNPQQALGLGSGTQSTYFSE |
| TSGLTSSLAFT..QGIELCNPQQALGLGSG.QST..S. |
Retrocopy | TSGLTSSLAFTSMQGIELCNPQQALGLGSGAQSTSQSQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis thaliana was not studied using RNA-Seq expression data.
Arabidopsis thaliana was not studied using ChIP-Seq data.
Arabidopsis thaliana was not studied using EST data.
Arabidopsis thaliana was not studied using FANTOM5 data.
retro_atha_27 was not experimentally validated.
Retrocopy orthology:
Arabidopsis thaliana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.