Common name: Mouse-ear cress
Latin name: Arabidopsis thaliana
Genome assembly: TAIR10
All retrocopies: 27
Parental genes: 27

Summary: Number of retrocopies :
Conserved ORF: 22 ORF 5 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_atha_1 78.85 % 75.64 % ORF
2. retro_atha_2 73.56 % 100.00 % ORF
3. retro_atha_3 82.81 % 100.00 % ORF
4. retro_atha_4 71.47 % 77.33 % ORF
5. retro_atha_5 69.41 % 80.91 % ORF
6. retro_atha_6 95.19 % 71.97 % ORF
7. retro_atha_7 85.36 % 84.92 % ORF
8. retro_atha_8 73.45 % 100.00 % ORF
9. retro_atha_9 63.05 % 84.87 % ORF
10. retro_atha_10 64.35 % 88.98 % ORF
11. retro_atha_11 65.60 % 99.71 % ORF
12. retro_atha_12 72.45 % 77.70 % ORF
13. retro_atha_13 60.98 % 99.38 % ORF
14. retro_atha_14 94.08 % 80.33 % ORF
15. retro_atha_15 54.23 % 83.83 % ORF
16. retro_atha_16 76.00 % 60.83 % ORF
17. retro_atha_17 51.77 % 90.79 % ORF
18. retro_atha_18 78.55 % 56.45 % ORF
19. retro_atha_19 50.44 % 93.56 % ORF
20. retro_atha_20 63.89 % 92.11 % ORF
21. retro_atha_21 82.21 % 100.00 % ORF
22. retro_atha_22 87.30 % 100.00 % ORF
23. retro_atha_23 73.02 % 52.07 % ORF
24. retro_atha_26 87.63 % 69.12 % ORF
25. retro_atha_27 91.24 % 79.79 % ORF
26. retro_atha_30 72.22 % 99.53 % ORF
27. retro_atha_31 80.37 % 77.98 % ORF
# Ensembl ID Symbol Description
1. AT1G65980 PRXIIB Peroxiredoxin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9XEX2]
2. AT5G08670 ATP synthase alpha/beta family protein [Source:TAIR;Acc:AT5G08670]
3. AT1G14870 PCR2 Protein PLANT CADMIUM RESISTANCE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU4]
4. AT1G01540 Probable serine/threonine-protein kinase At1g01540 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDL4]
5. AT3G02230 RGP1 UDP-arabinopyranose mutase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT9]
6. AT5G09660 PMDH2 Malate dehydrogenase, glyoxysomal [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP05]
7. AT1G60170 emb1220 pre-mRNA processing ribonucleoprotein binding region-containing protein [Source:TAIR;Acc:AT1G60170]
8. AT3G07800 Thymidine kinase [Source:TAIR;Acc:AT3G07800]
9. AT2G32600 hydroxyproline-rich glycoprotein family protein [Source:TAIR;Acc:AT2G32600]
10. AT4G27650 PEL1 Protein PELOTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT87]
11. AT3G47590 alpha/beta-Hydrolases superfamily protein [Source:TAIR;Acc:AT3G47590]
12. AT1G75270 DHAR2 Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
13. AT5G47540 Putative MO25-like protein At5g47540 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGK3]
14. AT3G06720 IMPA1 Importin subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q96321]
15. AT1G04270 RPS15A 40S ribosomal protein S15-1 [Source:UniProtKB/Swiss-Prot;Acc:Q08112]
16. AT5G40880 ZFWD3 Zinc finger CCCH domain-containing protein 59 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR9]
17. AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative [Source:TAIR;Acc:AT1G20960]
18. AT4G33070 PDC1 Pyruvate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:O82647]
19. AT5G37150 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT5G37150]
20. AT1G80160 Lactoylglutathione lyase / glyoxalase I family protein [Source:TAIR;Acc:AT1G80160]
21. AT5G66720 Probable protein phosphatase 2C 80 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ8]
22. AT2G45330 emb1067 RNA 2'-phosphotransferase, Tpt1 / KptA family [Source:TAIR;Acc:AT2G45330]
23. AT3G19760 RH2 DEAD-box ATP-dependent RNA helicase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
24. AT5G41770 crooked neck protein, putative / cell cycle protein, putative [Source:TAIR;Acc:AT5G41770]
25. AT4G27130 Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
26. AT1G05890 ARI5 Probable E3 ubiquitin-protein ligase ARI5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L829]
27. AT4G10850 SWEET7 Bidirectional sugar transporter SWEET7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBF7]
Retrogenes FASTA BED
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Parental genes FASTA BED
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