>retro_brap_1
ATGAAAGGTCTCTTCAAACATAAGCCTCGTCCTCCTGGTGAAATCGTTCGTCAGACACGAGATCTCATCGCCTTGTCCGA
AAACGAAAACCAAGAAACCGACATGAAACACTCTAAACGGTTAGGAATATGTCCTGAGATCTGCAGGAACATTAGGGAAT
TGAAATCGATCCTGTACGGAAACAGCGAAGCCGAGCCTGTTGCCGAAGCGTGCCTCTCGTTGACGCAAGAGTTCTTCAGA
GAAGACACGCTTCGCCCCTTGATCAAGTCTCTTCCGAAACTCGACCTAGAGGCGAGGAAAGACGCCACGCAGATCGTAGC
GAATCTGCAGAAGCAACAAGTCGGGAGCCGACTCGTTGCTTCTGAGTATCTCGAATCAAATCTCGACGTGATCGACACGC
TAGTCGAAGGAATCGGTAGAGACCACCATTTGGCATTGCATTACACGGGGATGCTTAAAGAATGCGTTCGTCATCAGGTT
GTTGCCAAGTACATCCTCGAGTCGAAGAACCTCGAAAGATTCTTCGACTATGTCCAGCTTCCGTATTTCGATGTAGCTAC
AGACGCGAGCAAGATCTTCCGGGAGCTTTTGACCAGGCACAAGTCCACGGTATCCGAGTACCTTGCCAAGAACTATGAGT
GGTTTTTCGCGGAGTACAACACGAGGCTGTTGGAGAAAGGGAGCTACTTCACGAAGAGACAAGCTTCGAAACTCCTAGGA
GATGTGTTGATGGACCGGTCTAACTCGGGTGTGATGGTGAGGTATGTGAGCAGTTTGGATCATTTGAGGATCATGATGAA
TCTGCTGAGAGAACCGACCAAGAACATTCAGCTAGAGGCCTTCCATATCTTCAAGCTGTTTGTGGCGAACGAGAGGAAAC
CAGAGGACATTGTGGCGATTCTTGTCGCGAATCGGAACAAGATTCTTCGGTTGTTTGCTGATTTGAAGCCTGAGAAGGAA
GATGAAGGGTTTGAAGCTGATAAGTTACTGGTTGTGGGTGAGATTGCATCGCTTTCTCTCAAGCTAAGTGAATGA
ORF - retro_brap_1 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.27 % |
Parental protein coverage: |
98.25 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MKGLFKSKPRTPADIVRQTRDLLLYADRSKSLPDLRESKREEKMAELSRNIRDMKSILYGNSEAEPVAEA |
| MKGLFK.KPR.P..IVRQTRDL...........D...SKR.....E..RNIR..KSILYGNSEAEPVAEA |
Retrocopy | MKGLFKHKPRPPGEIVRQTRDLIALSENENQETDMKHSKRLGICPEICRNIRELKSILYGNSEAEPVAEA |
|
Parental | CAQLTQEFFREDTLRLLITCLPKLNLETRKDATQLVANLQRQQVNSRLIASDYLEANLDLMDVLMEGF-E |
| C..LTQEFFREDTLR.LI..LPKL.LE.RKDATQ.VANLQ.QQV.SRL.AS.YLE.NLD..D.L.EG... |
Retrocopy | CLSLTQEFFREDTLRPLIKSLPKLDLEARKDATQIVANLQKQQVGSRLVASEYLESNLDVIDTLVEGIGR |
|
Parental | NTDLALHYGAMFRECIRHQIVARYVLESEHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLIK |
| ...LALHY..M..EC.RHQ.VA.Y.LES.....FFDY.QLP.FD.A.DA...F.ELLTRHKSTV.E.L.K |
Retrocopy | DHHLALHYTGMLKECVRHQVVAKYILESKNLERFFDYVQLPYFDVATDASKIFRELLTRHKSTVSEYLAK |
|
Parental | NEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSNSAVMTRYVSSRDNLRILMNLLRESSKSIQIEA |
| N..WFFA.YN..LLE...Y.T.RQA.KLLGD.L.DRSNS.VM.RYVSS.D.LRI.MNLLRE..K.IQ.EA |
Retrocopy | NYEWFFAEYNTRLLEKGSYFTKRQASKLLGDVLMDRSNSGVMVRYVSSLDHLRIMMNLLREPTKNIQLEA |
|
Parental | FHVFKLFAANQNKPADIINILVANKSKLLRLLADLKPDKEDERFEADKSQVLREIAAL |
| FH.FKLF.AN..KP.DI..ILVAN..K.LRL.ADLKP.KEDE.FEADK..V..EIA.L |
Retrocopy | FHIFKLFVANERKPEDIVAILVANRNKILRLFADLKPEKEDEGFEADKLLVVGEIASL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica rapa was not studied using RNA-Seq expression data.
Brassica rapa was not studied using ChIP-Seq data.
Brassica rapa was not studied using EST data.
Brassica rapa was not studied using FANTOM5 data.
retro_brap_1 was not experimentally validated.
Retrocopy orthology:
Brassica rapa does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.