Common name: Chinese cabbage
Latin name: Brassica rapa
Genome assembly: IVFCAASv1
All retrocopies: 46
Parental genes: 40

Summary: Number of retrocopies :
Conserved ORF: 41 ORF 5 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_brap_1 66.27 % 98.25 % ORF
2. retro_brap_2 82.70 % 100.00 % ORF
3. retro_brap_3 66.67 % 77.21 % ORF
4. retro_brap_4 54.07 % 94.76 % ORF
5. retro_brap_5 77.04 % 68.63 % ORF
6. retro_brap_6 65.30 % 93.56 % ORF
7. retro_brap_7 72.87 % 94.75 % ORF
8. retro_brap_8 83.96 % 70.83 % ORF
9. retro_brap_9 83.00 % 99.00 % ORF
10. retro_brap_10 57.46 % 79.04 % ORF
11. retro_brap_11 68.93 % 90.86 % ORF
12. retro_brap_12 82.80 % 78.00 % ORF
13. retro_brap_13 77.27 % 100.00 % ORF
14. retro_brap_14 97.90 % 99.65 % ORF
15. retro_brap_15 77.28 % 61.54 % ORF
16. retro_brap_16 57.76 % 99.38 % ORF
17. retro_brap_17 79.44 % 99.18 % ORF
18. retro_brap_18 95.88 % 56.00 % ORF
19. retro_brap_19 65.19 % 87.71 % ORF
20. retro_brap_20 65.58 % 97.37 % ORF
21. retro_brap_21 54.28 % 70.16 % ORF
22. retro_brap_22 70.68 % 65.04 % ORF
23. retro_brap_23 70.93 % 100.00 % ORF
24. retro_brap_24 87.36 % 68.85 % ORF
25. retro_brap_25 53.85 % 83.37 % ORF
26. retro_brap_26 72.01 % 60.54 % ORF
27. retro_brap_27 61.56 % 54.87 % ORF
28. retro_brap_28 68.07 % 97.52 % ORF
29. retro_brap_29 76.40 % 84.92 % ORF
30. retro_brap_30 85.46 % 92.65 % ORF
31. retro_brap_31 95.12 % 100.00 % ORF
32. retro_brap_32 83.64 % 52.28 % ORF
33. retro_brap_33 67.37 % 80.08 % ORF
34. retro_brap_34 54.79 % 70.55 % ORF
35. retro_brap_36 93.28 % 87.50 % ORF
36. retro_brap_40 66.33 % 57.99 % ORF
37. retro_brap_44 52.44 % 64.96 % ORF
38. retro_brap_45 75.48 % 55.72 % ORF
39. retro_brap_47 73.15 % 55.77 % ORF
40. retro_brap_48 66.67 % 87.93 % ORF
41. retro_brap_51 72.45 % 77.98 % ORF
42. retro_brap_53 79.14 % 79.50 % ORF
43. retro_brap_54 97.06 % 100.00 % ORF
44. retro_brap_55 96.32 % 100.00 % ORF
45. retro_brap_56 66.33 % 57.99 % ORF
46. retro_brap_57 70.14 % 79.60 % ORF
# Ensembl ID Symbol Description
1. Bra003745 AT4G40030 (E=4e-072) | histone H3.2
2. Bra029327 AT5G11240 (E=4e-027) | transducin family protein / WD-40 repeat family protein
3. Bra027434 TBP1 AT3G13445 (E=5e-108) TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding
4. Bra006013 AT5G08690 (E=1e-281) | ATP synthase beta chain 2, mitochondrial
5. Bra009397 PMDH2 AT5G09660 (E=1e-188) PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase
6. Bra007180 AT3G55620 (E=2e-133) emb1624 | emb1624 (embryo defective 1624); ribosome binding / translation initiation factor
7. Bra028896 AT5G01320 (E=0.0) | pyruvate decarboxylase, putative
8. Bra000445 AT2G47250 (E=0.0) | RNA helicase, putative
9. Bra014962 RNR2 AT3G23580 (E=1e-182) RNR2, RNR2A | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase
10. Bra010092 AT1G69630 (E=3e-075) | F-box family protein
11. Bra015463 AT1G05890 (E=4e-251) | zinc finger protein-related
12. Bra029247 AT5G62740 (E=6e-153) | band 7 family protein
13. Bra028263 AT5G62300 (E=7e-061) | 40S ribosomal protein S20 (RPS20C)
14. Bra013613 AT4G22350 (E=4e-239) | ubiquitin carboxyl-terminal hydrolase family protein
15. Bra007114 AT4G10400 (E=3e-121) | F-box family protein
16. Bra028950 AT5G55970 (E=9e-109) | zinc finger (C3HC4-type RING finger) family protein
17. Bra030324
18. Bra009348 AT3G52350 (E=5e-017) | D111/G-patch domain-containing protein
19. Bra008491 AT1G80160 (E=1e-087) | lactoylglutathione lyase family protein / glyoxalase I family protein
20. Bra005691 AT5G01290 (E=0.0) | mRNA guanylyltransferase/ phosphatase/ polynucleotide 5'-phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase
21. Bra030855 AT1G55520 (E=3e-106) TBP2, ATTBP2 | TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding
22. Bra014819 AT3G54400 (E=6e-209) | aspartyl protease family protein
23. Bra001266 AT3G07800 (E=1e-106) | thymidine kinase, putative
24. Bra000458 AT2G47710 (E=3e-084) | universal stress protein (USP) family protein
25. Bra010168 ESP3 AT1G32490 (E=0.0) EMB2733, ESP3 | ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding
26. Bra019037 AT4G27650 (E=5e-203) PEL1 | PEL1 (PELOTA); translation release factor
27. Bra022833 AT3G01610 (E=2e-229) CDC48C, emb1354 | CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
28. Bra012095 AT5G66720 (E=2e-174) | 5-azacytidine resistance protein -related
29. Bra029230 AT5G63370 (E=2e-170) | protein kinase family protein
30. Bra031522 emb1220 AT1G60170 (E=4e-222) emb1220 | emb1220 (embryo defective 1220)
31. Bra000163 AT2G40060 (E=1e-108) | protein binding / structural molecule
32. Bra022139 AT5G47540 (E=9e-185) | binding
33. Bra036718 AT1G64760 (E=2e-245) | glycosyl hydrolase family 17 protein
34. Bra037306 AT4G00026 (E=5e-100) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim21 (InterPro:IPR013261); Has 168 Blast hits to 168 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 52; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
35. Bra005441 AT2G34250 (E=1e-270) | protein transport protein sec61, putative
36. Bra031010 AT1G17980 (E=4e-290) | nucleotidyltransferase family protein
37. Bra032519 AT1G04270 (E=1e-082) RPS15 | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome
38. Bra019508 AT3G47590 (E=7e-126) | esterase/lipase/thioesterase family protein
39. Bra037362 AT4G01330 (E=6e-230) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase
40. Bra035212 AT4G11610 (E=0.0) | C2 domain-containing protein
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)