RetrogeneDB ID: | retro_brap_28 | ||
Retrocopylocation | Organism: | Chinese cabbage (Brassica rapa) | |
Coordinates: | A09:32502910..32503279(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bra031095 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bra009348 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.07 % |
Parental protein coverage: | 97.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SAGSSSSWAAINSSNIGFQLLKKQGWKEGTGLGVAEQGILVPVQAELKNNKRGIGAVAEKPTKRKAVKAS |
S..SSS...AI.SSNIGF.LLKKQGWKEGTGLG...QGIL.P.Q..LKNNKRG.G..AE..TKRKA.K.. | |
Retrocopy | SERSSSLDVAIDSSNIGFKLLKKQGWKEGTGLGISQQGILEPLQTLLKNNKRGLG--AEITTKRKAAKPH |
Parental | TDSGKE-EEVSKQSKKLSKKMRKLMEHEKQLQEKEFERAFFREFWPDNV |
.........V.K..KKLSKKMRK..EHEK.L.EKEFERAFFREFWPDNV | |
Retrocopy | HSIATDSKQVAKKAKKLSKKMRKMIEHEKHLLEKEFERAFFREFWPDNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica oleracea | Bo9g174360 | 1 retrocopy | |
Brassica rapa | Bra009348 | 1 retrocopy |
retro_brap_28 ,
|
Arabidopsis lyrata | fgenesh1_pg.C_scaffold_6000712 | 1 retrocopy |