RetrogeneDB ID: | retro_btau_1591 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:98896057..98896522(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000003118 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC1 | ||
Ensembl ID: | ENSBTAG00000001637 | ||
Aliases: | None | ||
Description: | FUN14 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:F1N5S9] |
Percent Identity: | 82.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATRNPPPQEYESDDDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVSGWCAGFLFQK |
MATR..PPQEYESD.DSY.VLDLTEYARR.HWWNRVF.HSSGP.VEKYSVATQI..GGVSGWCAGFLFQK | |
Retrocopy | MATRHLPPQEYESDGDSYKVLDLTEYARRQHWWNRVFAHSSGPIVEKYSVATQIAVGGVSGWCAGFLFQK |
Parental | VGKLAATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINNIIEEATEFVKQNIV |
V.KLAATAVGGGFLLLQ.A...GYVQI.WKR.EKDVNKAK...KKRANKAAPE..N.IE.ATEFV.QNIV | |
Retrocopy | VRKLAATAVGGGFLLLQMAGDGGYVQINWKRREKDVNKAKGRMKKRANKAAPEVSNVIEAATEFVRQNIV |
Parental | ISSGFVGGFLLGLAS |
I.SG.VGGFL.GLAS | |
Retrocopy | IASGLVGGFLPGLAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 9 .44 RPM |
ERP005899_muscle | 0 .00 RPM | 11 .24 RPM |
SRP017611_brain | 0 .05 RPM | 10 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .25 RPM |
SRP017611_liver | 0 .00 RPM | 4 .68 RPM |
SRP030211_testis | 0 .01 RPM | 9 .36 RPM |