RetrogeneDB ID: | retro_ecab_210 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 10:13210758..13211200(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC1 | ||
Ensembl ID: | ENSECAG00000022709 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746] |
Percent Identity: | 71.52 % |
Parental protein coverage: | 95.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MATRNPPPQE-YESDDDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEK-YSVATQIVMGGVTGWCAGFLF |
M.T..PPPQ...ESDDDSYEVLDL...ARR.HW.N.V.GHSS.P.V.K..SVA.QI..GGVTGWCAGFLF | |
Retrocopy | MVTQKPPPQK>HESDDDSYEVLDLNGQARRCHW*NQVLGHSSRPIVQK>FSVAIQIIVGGVTGWCAGFLF |
Parental | QKVGKLAATAVGGGFLLLQIAS-HSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINNIIEEATEFVKQ |
QKVGKL..T.V.GG..LL......SGYVQ..WKRVEK..NKAKRQ..K.ANKAAPEINNIIEE..EFVK. | |
Retrocopy | QKVGKLPETEV-GGGFLLLQIA<QSGYVQSYWKRVEKELNKAKRQTEKSANKAAPEINNIIEEVAEFVKH |
Parental | NIVISSGFVGG |
NIVISSGFVGG | |
Retrocopy | NIVISSGFVGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 6 .85 RPM |
SRP021940_cerebellum | 0 .00 RPM | 17 .45 RPM |
SRP021940_embryo | 0 .03 RPM | 6 .29 RPM |
SRP021940_placental_villous | 0 .00 RPM | 3 .42 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 4 .69 RPM |
SRP021940_testis | 0 .00 RPM | 2 .69 RPM |