RetrogeneDB ID: | retro_btau_1796 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:10453572..10454265(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF12 | ||
Ensembl ID: | ENSBTAG00000021573 | ||
Aliases: | DCAF12, WDR40A | ||
Description: | DDB1- and CUL4-associated factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q3MHH0] |
Percent Identity: | 59.31 % |
Parental protein coverage: | 50.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RHNVSRVPVYSHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKTENTLSKLLSTK |
R.N.....VY.HI......D.P...TN..N.KVRA.AF.....ELGAV..DGYFHLWK..NTLSKLLS.. | |
Retrocopy | RRNAEGLSVYAHIRPAEVEDVPRASTNRRNSKVRAMAFSATRQELGAVTMDGYFHLWKAQNTLSKLLSIR |
Parental | LPYCRENVCLAYGNEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSL |
LPYCRENVCL....E.S.YAVGSQ.HVSFLD.RQ........CS.E...G.RS.SFYEH..TVGTG.GSL | |
Retrocopy | LPYCRENVCLTFCGELSLYAVGSQSHVSFLDLRQGHQSIRYLCSHEGSTGVRSLSFYEHMVTVGTGHGSL |
Parental | LFYDIRAQRFLEEKLSACYGSKPKLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTK |
LFYDIRAQ.FLEEK.S....S.P...G....L..G.GWLN.D....N..S.....PNA.YTHCY.....K | |
Retrocopy | LFYDIRAQKFLEEKVSDSQHSSPRPTGRRFRLICGRGWLNQDDLQMNDLSALGELPNALYTHCYNWPEMK |
Parental | LFVAGGPLPSGLHGNYAGLWS |
LFVAGGPLPS.L.GNYAGLWS | |
Retrocopy | LFVAGGPLPSILRGNYAGLWS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 39 .94 RPM |
ERP005899_muscle | 0 .00 RPM | 58 .97 RPM |
SRP017611_brain | 0 .00 RPM | 40 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .64 RPM |
SRP017611_liver | 0 .00 RPM | 41 .08 RPM |
SRP030211_testis | 1 .16 RPM | 172 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000309 | 1 retrocopy | |
Bos taurus | ENSBTAG00000021573 | 3 retrocopies |
retro_btau_1794, retro_btau_1795, retro_btau_1796 ,
|
Equus caballus | ENSECAG00000023064 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013279 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005881 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017458 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004996 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015799 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001281 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019127 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008654 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010986 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006904 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014394 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010591 | 1 retrocopy |