Parental gene:

DCAF12, ENSECAG00000023064

Aliases:DCAF12, WDR40A
Description:DDB1 and CUL4 associated factor 12 [Source:HGNC Symbol;Acc:19911]
Organism:Horse (Equus caballus)
Coordinates:23:50133567..50164338(-)


>ENSECAG00000023064
ATGGCCCGGAAAGCAGTTAGCAGGAAGCGGAAGGCGTCCGCCTCGCCGGGAGCTGGGAGCGACGCTCAGGGCCCGCAGTT
TGGCTGGGATCACTCACTTCACAAAAGGAAAAGACTCCCCCCAGTGAAGAGATCCTTAGTGTACTACCTGAAGAACCGAG
AGGTCAGGCTACAGAATGAAACCAACTACTCCCGAGTGTTGCATGGTTATGCAGCACAGCAACTTCCCGGTCTTCTGAAA
GAGAGAGAGTTTCACCTTGGGACCCTTAATAAAGTGTTTGCGTCTCAGTGGCTGAATCATAGGCAAGTGGTGTGTGGCAC
AAAATGCAACACGCTATTTGTAGTGGATGTCCAGACAAGCCAGATCACCAAGATTCCCATTCTGAAGGACCGAGAACCTG
GATGTGTGACCCAGCAGGGCTGTGGTATCCATGCCATCGAGCTGAATCCCTCTAGGACACTGTTAGCCACCGGAGGAGAC
AACCCCAACAGTCTTGCCATCTACCGGCTGCCTACGCTAGATCCTGTGTGTGTGGGAGATGATGGACACAAGGACTGGAT
CTTTTCCATTGCATGGATCAGCGACAGTATGGCGGTGTCTGGCTCACGTGATGGTTCTATGGGACTCTGGGAGGTGACAG
ATGATGTGTTGACCAAAAGTGATGCAAGGCACAATGTGTCACGGGTCCCTGTCTACACTCACATCACTCACAAGGCCTTA
AAGGACATCCCCAAGGAGGACACAAATCCTGACAACTGCAAGGTTCGGGCTCTGGCCTTTAACAACAAAAACAAGGAATT
GGGAGCAGTATCTCTGGATGGCTACTTTCATCTCTGGAAAGCTGAAAATACACTGTCTAAGCTCCTCTCCACCAAATTGC
CCTATTGCCGTGAGAATGTGTGTCTGGCCTATGGTAGTGAATGGTCAGTATATGCAGTGGGCTCCCAAGCTCACGTCTCC
TTCTTGGATCCACGGCAGCCGTCGTACAACGTCAAGTCTGTTTGCTCCAGGGAGCGAGGCAGTGGGATCCGGTCAGTGAG
TTTCTATGAGCACATCATCACTGTGGGCACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAGAGGTTCCTGG
AAGAGAGGCTCGCTGCTTGTTATGGGTCCAAGCCCAAACTGGCAGGGGAGAATCTGAAACTAACCACTGGCAAAGGCTGG
CTGAATCATGATGAAACCTGGAGGAATTACTTTTCGGACATTGATTTCTTCCCCAATGCTGTTTACACCCACTGCTACGA
CTCGTCGGGAACGAAGCTCTTTGTGGCAGGAGGCCCCCTCCCTTCAGGGCTCCATGGGAACTATGCTGGGCTCTGGAGTT
AA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 33 .71 RPM
SRP021940_cerebellum 26 .07 RPM
SRP021940_embryo 40 .79 RPM
SRP021940_placental_villous 44 .02 RPM
SRP021940_synovial_membrane 39 .64 RPM
SRP021940_testis 189 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000309 ortholog_one2one 1 retrogene
retro_amel_73,
Bos taurus ENSBTAG00000021573 ortholog_one2one 3 retrogenes
retro_btau_1794, retro_btau_1795, retro_btau_1796,
Erinaceus europaeus ENSEEUG00000013279 ortholog_one2one 1 retrogene
retro_eeur_403,
Microcebus murinus ENSMICG00000005881 ortholog_one2one 1 retrogene
retro_mmur_14,
Macaca mulatta ENSMMUG00000017458 ortholog_one2one 1 retrogene
retro_mmul_202,
Nomascus leucogenys ENSNLEG00000004996 ortholog_one2one 1 retrogene
retro_nleu_6,
Otolemur garnettii ENSOGAG00000015799 ortholog_one2one 1 retrogene
retro_ogar_237,
Ochotona princeps ENSOPRG00000001281 ortholog_one2one 2 retrogenes
retro_opri_1178, retro_opri_470,
Pongo abelii ENSPPYG00000019127 ortholog_one2one 1 retrogene
retro_pabe_64,
Pteropus vampyrus ENSPVAG00000008654 ortholog_one2one 1 retrogene
retro_pvam_16,
Sus scrofa ENSSSCG00000010986 ortholog_one2one 1 retrogene
retro_sscr_17,
Ictidomys tridecemlineatus ENSSTOG00000006904 ortholog_one2one 1 retrogene
retro_itri_168,
Tarsius syrichta ENSTSYG00000014394 ortholog_one2one 1 retrogene
retro_tsyr_1965,
Tursiops truncatus ENSTTRG00000010591 ortholog_one2one 1 retrogene
retro_ttru_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1128 69.05 85.43
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2. retro_ecab_1129 69.15 85.43
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Download FASTA sequences of all ENSECAG00000023064 retrocopies