RetrogeneDB ID: | retro_btau_718 | ||
Retrocopy location | Organism: | Cow (Bos taurus) | |
| Coordinates: | 18:30157969..30158278(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BLVRB | ||
| Ensembl ID: | ENSBTAG00000010508 | ||
| Aliases: | None | ||
| Description: | Flavin reductase (NADPH) [Source:UniProtKB/Swiss-Prot;Acc:P52556] |
Retrocopy-Parental alignment summary:
>retro_btau_718
ATGGCTGTTAAGAAGATTGCCCTCTTTGGCGCCATGGGAGGACCAGGCTCACCACCTGGTCAGGCGATGCAGGTAGGCTC
TGAGATGATAGTGCTGGTGTGGAACACCTCCTCCAGGCTGCCTGCAGAGGGTCCCAGCCAGCCCACGTGATAGAGGGTGA
TGTCCAGCAGGTGGCTGACATGACTAGACTGAGGCTGGAAAGAACGCCATCATCACGCTGCTGGGCACCAGCAGTGATCT
CGGTCCTCCCACAGTGATATCTGAGGGTGCCTGGAACATTGTGGGGCCATAAGGGCCCATGACATGGAC
ORF - retro_btau_718 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 59.26 % |
| Parental protein coverage: | 50.49 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | MVVKKIALFGATGNTGLTTLAQAVQAGYEVTVLV-RDPSRLPSEGP-QPAHVVVGDVRQPADV-DKTVAG |
| M.VKKIALFGA.G..G.....QA.Q.G.E..VLV....SRLP.EGP.QPAHV..GDV.Q.AD..D.T.AG | |
| Retrocopy | MAVKKIALFGAMGGPG-SPPGQAMQVGSEMIVLVWNTSSRLPAEGP<QPAHVIEGDVQQVADM<D*TEAG |
| Parental | QDAVIVLLGTRNDLSPTTVMSEGAQNIV-AAMKAHGVD |
| ..A.I.LLGT..DL.P.TV.SEGA.NIV..A..AH..D | |
| Retrocopy | KNAIITLLGTSSDLGPPTVISEGAWNIV<GAIRAHDMD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .00 RPM | 13 .77 RPM |
| ERP005899_muscle | 0 .00 RPM | 51 .52 RPM |
| SRP017611_brain | 0 .00 RPM | 9 .46 RPM |
| SRP017611_kidney | 0 .00 RPM | 27 .21 RPM |
| SRP017611_liver | 0 .00 RPM | 38 .96 RPM |
| SRP030211_testis | 0 .03 RPM | 3 .70 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_718 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_718 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_718 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 4 parental genes, and 6 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000010508 | 2 retrocopies |
retro_btau_289, retro_btau_718 ,
|
| Rattus norvegicus | ENSRNOG00000024410 | 1 retrocopy | |
| Ictidomys tridecemlineatus | ENSSTOG00000002958 | 1 retrocopy | |
| Tupaia belangeri | ENSTBEG00000015357 | 2 retrocopies |