RetrogeneDB ID: | retro_btau_74 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:9851669..9851972(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000003280 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDA1 | ||
Ensembl ID: | ENSBTAG00000017068 | ||
Aliases: | DDA1, PCIA1 | ||
Description: | DET1- and DDB1-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5E9A9] |
Percent Identity: | 74.23 % |
Parental protein coverage: | 95.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAK |
MADFLKGLPV..KSNFS.FHA....KASNRR..VYLPT.EYPSEQIIVTEKTNILLRYL.QQ.DKKNAA. | |
Retrocopy | MADFLKGLPVDDKSNFSSFHANCLSKASNRRLPVYLPTQEYPSEQIIVTEKTNILLRYLQQQRDKKNAAE |
Parental | KRDQEQVELEGESSAPPRKVARTDSPD |
K.DQEQV.LE.ES.A.P.K.....S.D | |
Retrocopy | KTDQEQVNLEAESWASPCKIPGIYSQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .14 RPM | 1 .15 RPM |
ERP005899_muscle | 0 .16 RPM | 8 .24 RPM |
SRP017611_brain | 0 .23 RPM | 15 .58 RPM |
SRP017611_kidney | 0 .30 RPM | 8 .59 RPM |
SRP017611_liver | 0 .00 RPM | 4 .76 RPM |
SRP030211_testis | 36 .02 RPM | 35 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017068 | 3 retrocopies |
retro_btau_1152, retro_btau_536, retro_btau_74 ,
|
Canis familiaris | ENSCAFG00000031251 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000006944 | 1 retrocopy | |
Felis catus | ENSFCAG00000001001 | 1 retrocopy | |
Homo sapiens | ENSG00000130311 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005802 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001763 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003990 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016231 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005738 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003701 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009710 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010668 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000039417 | 1 retrocopy |