RetrogeneDB ID: | retro_btau_969 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 22:14972008..14972884(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000025379 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OTUD6B | ||
Ensembl ID: | ENSBTAG00000003481 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MEAVLTEELDEEEQLVRRHRKEKKELQAKIQSMKNAVPRNDKKRRKQLTEDVAKLEAEMEQKHREELDQL |
MEAVLTEELDEEEQLVRRHRKEK.ELQAKIQS.KNAVPRNDKKRRKQLTEDVAKLEAEMEQK.REELDQL | |
Retrocopy | MEAVLTEELDEEEQLVRRHRKEK-ELQAKIQSWKNAVPRNDKKRRKQLTEDVAKLEAEMEQKEREELDQL |
Parental | KLTSKESKIDSVAVNISNLVLENQPLRISKAQKRRDKKAALEKEREERIAEAEIENLTGARHVESEKLAQ |
KLTSKESKIDSVAVNISNLVLENQPLRISKAQKRRDKKAALEKEREERIAEAEIENLTGARHVESE.LAQ | |
Retrocopy | KLTSKESKIDSVAVNISNLVLENQPLRISKAQKRRDKKAALEKEREERIAEAEIENLTGARHVESEQLAQ |
Parental | ILAARQLEIKQIPSDGHCMYRAIEDQLKEQNGVLTVAALRCQTANYMQSHVEDFLPFLTNPNTGEMYTPE |
I.AARQL.IKQIPSDGHCMYRAIEDQLKEQNGVLTVAALRCQTANYMQSHVEDFLPFLTNPNTGEMYTPE | |
Retrocopy | IVAARQL*IKQIPSDGHCMYRAIEDQLKEQNGVLTVAALRCQTANYMQSHVEDFLPFLTNPNTGEMYTPE |
Parental | EFGKYCDDIVNTAAWGGQLELRALSHILRTPIEIIQADSPPIVVGEEYPENPLILVYMRHAYGLGEHYNS |
EFGKYCDDIVNTAAWGGQLELRALSHIL.TPIEIIQADSPPIVVGEEYPE.PLILVYMRHAYGLGEHYNS | |
Retrocopy | EFGKYCDDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIVVGEEYPEDPLILVYMRHAYGLGEHYNS |
Parental | VTRLVNTATENCS |
VTRLVNTATENCS | |
Retrocopy | VTRLVNTATENCS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 14 .85 RPM |
ERP005899_muscle | 0 .00 RPM | 14 .89 RPM |
SRP017611_brain | 0 .05 RPM | 16 .63 RPM |
SRP017611_kidney | 0 .06 RPM | 12 .86 RPM |
SRP017611_liver | 0 .00 RPM | 13 .59 RPM |
SRP030211_testis | 0 .64 RPM | 9 .33 RPM |