Parental gene:

OTUD6B, ENSSSCG00000006120

Aliases:None
Description:OTU domain containing 6B [Source:HGNC Symbol;Acc:24281]
Organism:Pig (Sus scrofa)
Coordinates:4:49397920..49414328(-)


>ENSSSCG00000006120
ATGGAGGCAGTCTTGACCGAGGAGCTTGATGAGGAGGAGCAGCTGGTGAGAAGGCATCGCAAAGAGAAGAAGGAGTTGCA
AGCCAAAATTCAGAGTATGAAGAATGTTGTTCCCAAGAATGACAAAAAGAGGAGGAAGCAACTCACTGAAGATGTTGCTA
AGTTAGAAGCAGAAATGGAACAGAAACATAGAAAGGAACTGGAGCAATTGAAGCTGACTTCTAAGGAGAGTAAAATAGAT
TCTGTTGCTGTTAATATTTCAAACCTGGTTCTTGAGAATCAGCCACTTCGGATATCAAAAGCACAAAAGAGACGGGAAAA
GAAAGCTGCATTGGAAAAGGAGCGGGAAGAAAGGATAGCTGAAGCTGAAATTGAAAACTTAACTGGAGCTAGACATGTAG
AAAGTGAAAAACTTGCTCAGATACTGGGAGCTAGACAGTTGGAAATTAAACAGATTCCATCTGATGGGCACTGTATGTAT
AGAGCCATTGAAGATCAACTGAAAGAACAGGAGTGCACTCTGACTGTGGCTGCATTAAGAAGTCAAACTGCTGACTATAT
GCAAAGTCATGTGGAAGACTTCCTGCCATTTTTAACGAATCCTAATACAGGAGAGATGTATACGCCAGAAGAGTTTGGAA
AGTACTGTGATGATATTGTAAACACAGCTGCATGGGGAGGTCAGCTTGAGCTAAGAGCCTTATCTCACATTTTACGATCA
CCAATAGAGATAATACAGGCAGATTCTCCTCCTATTGTAGTTGGTGAAGAATACTCAAAAAAACCATTAATACTTGTATA
TATGAGACATGCATATGGCTTAGGAGAACACTACAATTCTGTTACACAGTTGAACACAGCTACTGAAAATTGCAGTTAG

Library Parental gene expression (RPM)
SRP014902_placenta 2 .26 RPM
SRP014902_testis 15 .70 RPM
SRP018288_heart 38 .03 RPM
SRP018288_kidney 32 .41 RPM
SRP018288_liver 16 .47 RPM
SRP018288_lung 23 .93 RPM
SRP018856_adipose 14 .70 RPM
SRP035408_brain 21 .18 RPM
SRP035408_liver 15 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006971 ortholog_one2one 1 retrogene
retro_amel_74,
Bos taurus ENSBTAG00000003481 ortholog_one2one 2 retrogenes
retro_btau_236, retro_btau_969,
Choloepus hoffmanni ENSCHOG00000004266 ortholog_one2one 2 retrogenes
retro_chof_1969, retro_chof_2069,
Cavia porcellus ENSCPOG00000013595 ortholog_one2one 1 retrogene
retro_cpor_103,
Equus caballus ENSECAG00000018205 ortholog_one2one 1 retrogene
retro_ecab_44,
Felis catus ENSFCAG00000029900 ortholog_one2one 1 retrogene
retro_fcat_124,
Loxodonta africana ENSLAFG00000011002 ortholog_one2one 1 retrogene
retro_lafr_16,
Microcebus murinus ENSMICG00000012278 ortholog_one2one 1 retrogene
retro_mmur_1222,
Myotis lucifugus ENSMLUG00000016954 ortholog_one2one 1 retrogene
retro_mluc_1226,
Macaca mulatta ENSMMUG00000013396 ortholog_one2one 1 retrogene
retro_mmul_350,
Monodelphis domestica ENSMODG00000007551 ortholog_one2many 2 retrogenes
retro_mdom_119, retro_mdom_1326,
Mustela putorius furo ENSMPUG00000009194 ortholog_one2one 1 retrogene
retro_mputfur_51,
Mus musculus ENSMUSG00000040550 ortholog_one2one 1 retrogene
retro_mmus_2456,
Nomascus leucogenys ENSNLEG00000002420 ortholog_one2one 1 retrogene
retro_nleu_2365,
Oryctolagus cuniculus ENSOCUG00000000218 ortholog_one2one 1 retrogene
retro_ocun_29,
Otolemur garnettii ENSOGAG00000011298 ortholog_one2one 1 retrogene
retro_ogar_228,
Ochotona princeps ENSOPRG00000007655 ortholog_one2one 1 retrogene
retro_opri_413,
Pan troglodytes ENSPTRG00000020413 ortholog_one2one 1 retrogene
retro_ptro_3120,
Ictidomys tridecemlineatus ENSSTOG00000002954 ortholog_one2one 1 retrogene
retro_itri_9,
Tupaia belangeri ENSTBEG00000017070 ortholog_one2one 1 retrogene
retro_tbel_304,
Tursiops truncatus ENSTTRG00000004345 ortholog_one2one 1 retrogene
retro_ttru_1207,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_52 59.51 55.82
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Download FASTA sequences of all ENSSSCG00000006120 retrocopies