RetrogeneDB ID: | retro_cfam_1586 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:7542769..7543079(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000017264 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.26 % |
Parental protein coverage: | 51.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KAKSSVPASDDTYPEIEKFFPFNPLDFESFDLPEEHQIAHLPLNGVPLMILDE-ERELEKLLHL-GPPSP |
KAKSSV.A.DDT.PEIE.F.P.N.LDF.S.DLPEEH.IAH.P.N.V..M..DE.E.ELEKLL.L.GP.SP | |
Retrocopy | KAKSSVLALDDTNPEIENFIPSNTLDFLSLDLPEEHDIAHFPVNRVLPMSFDE<EEELEKLLYL<GPSSP |
Parental | LKMPSLSWESDLLQSP-SVLSTLDVELPPVCYDLDV |
.K..S..W...LLQ.P.S.....DVELPP.CYDL.. | |
Retrocopy | SKLLSSLWKCNLLQPPLSLR*PPDVELPPPCYDLNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 3 .28 RPM |
SRP017611_brain | 0 .00 RPM | 0 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .26 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |