RetrogeneDB ID: | retro_cfam_1735 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:40899844..40900279(+) | ||
Located in intron of: | ENSCAFG00000018209 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEB1 | ||
Ensembl ID: | ENSCAFG00000008152 | ||
Aliases: | None | ||
Description: | transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) [Source:HGNC Symbol;Acc:11617] |
Percent Identity: | 81.63 % |
Parental protein coverage: | 97.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GGARGAGAVAAVAAGLTRRKNFRCSCRSKVEFRKNIMDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKRE |
GGARG...........TR..N....CRSKVEF.KNIMDGEEKTYGGCEGPDA.YVKL.SSDGHEFIVKRE | |
Retrocopy | GGARGTXXXXXXXXXXTR--NY*SFCRSKVEFQKNIMDGEEKTYGGCEGPDALYVKLMSSDGHEFIVKRE |
Parental | HALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELL |
HALTS.TIK.MLSGPGQFAENETNEVNFREIPSHVLSKVC.YFTYKVRYTNSS.EIPEFP.APEIAL.LL | |
Retrocopy | HALTSRTIKTMLSGPGQFAENETNEVNFREIPSHVLSKVCVYFTYKVRYTNSSKEIPEFPTAPEIALKLL |
Parental | MAANFLD |
.AANFLD | |
Retrocopy | TAANFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 36 .83 RPM |
SRP017611_brain | 0 .00 RPM | 17 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .48 RPM |
SRP017611_liver | 0 .00 RPM | 5 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008152 | 3 retrocopies |
retro_cfam_1320, retro_cfam_1344, retro_cfam_1735 ,
|
Macropus eugenii | ENSMEUG00000015988 | 11 retrocopies |