RetrogeneDB ID: retro_meug_1642

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold504967:87..419(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000015988
• Aliases: None
• Description: None

Sequence

>retro_meug_1642
GGAGAAGAGAAAACATATGGCAAATGTAAAGGCCCAGATGCTATGTATGTGAAATTGATATCTTCTGATGGTCATGAATT
TATTGTGAAAATGGAGAATGCTTTAACATCAGGAACAATAAAAGTCATGTTAAGTGGCCCAGGTCAGTTTGCTGAAAATG
AAAACAATAGGTTAATTTTAGAGAAATTCTATCACATGCACTATCAATAGTATGCATGTATTTTACCTACAAGGTTAGCT
ACACTAATGGCTATACAGACATTTCCGAATTTCCAATTGCACTTGAAATTGCACTGGAATTTCTGAAGGTTGCAAACTTC
CTAGATTGTGAA

Alignment

ORF - retro_meug_1642 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.46 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPXQFAENEANE-VNFREISSHVLS
          GEEKTYG.C.GPDAMYVKLISSDGHEFIVK.E.ALTSGTIK.MLSGP.QFAENE.N..VNFREI.SH.LS
Retrocopy GEEKTYGKCKGPDAMYVKLISSDGHEFIVKMENALTSGTIKVMLSGPGQFAENENNR<VNFREILSHALS

Parental  KVYMYFTYKIHYTNSSTEIPEFPIALEIALELLMAVNFLDCE
          .V.MYFTYK..YTN..T.I.EFPIALEIALE.L...NFLDCE
Retrocopy IVCMYFTYKVSYTNGYTDISEFPIALEIALEFLKVANFLDCE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1642 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1642 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008152	3 retrocopies	retro_cfam_1320, retro_cfam_1344, retro_cfam_1735,
Erinaceus europaeus	ENSEEUG00000005157	3 retrocopies	retro_eeur_181, retro_eeur_271, retro_eeur_556,
Macropus eugenii	ENSMEUG00000015988	11 retrocopies	retro_meug_1209, retro_meug_1508, retro_meug_1531, retro_meug_1642 , retro_meug_1740, retro_meug_1764, retro_meug_308, retro_meug_398, retro_meug_743, retro_meug_768, retro_meug_815,