RetrogeneDB ID: | retro_cfam_2031 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | JH373331.1:58528..59604(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000007340 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAAVSGLMRRPLEQVSGLLRRRFHRTAPAALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVS |
.AAVSGLMRRP.EQVSGLLRRRFHRTA.AALQVTVREA.NQG.DEELERDEKVF.LGEEVAQYDGAYKVS | |
Retrocopy | VAAVSGLMRRPPEQVSGLLRRRFHRTALAALQVTVREALNQGTDEELERDEKVFMLGEEVAQYDGAYKVS |
Parental | RGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV |
RGLWKKYGDKRIIDTPISEMGFA.IAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV | |
Retrocopy | RGLWKKYGDKRIIDTPISEMGFARIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV |
Parental | PIVFR-GPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP |
PIVFR.GPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP | |
Retrocopy | PIVFR<GPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP |
Parental | FEFPSEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIETI |
FEFPSEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAATVLSKEGIECEVINM.TIRPMDIETI | |
Retrocopy | FEFPSEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAATVLSKEGIECEVINM*TIRPMDIETI |
Parental | EASVMKTNHLITVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDI |
EASVMKTNHLITVEGGWPQFGVGAEICA.IMEGPAFNFLDAPAV.VTGADVPMPYAKILEDNSVPQVKDI | |
Retrocopy | EASVMKTNHLITVEGGWPQFGVGAEICAKIMEGPAFNFLDAPAVPVTGADVPMPYAKILEDNSVPQVKDI |
Parental | IFAIKKTLNI |
IFAIKKTLNI | |
Retrocopy | IFAIKKTLNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 45 .69 RPM |
SRP017611_brain | 0 .08 RPM | 34 .06 RPM |
SRP017611_kidney | 0 .13 RPM | 113 .45 RPM |
SRP017611_liver | 0 .00 RPM | 14 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021724 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007340 | 2 retrocopies |
retro_cfam_1215, retro_cfam_2031 ,
|
Callithrix jacchus | ENSCJAG00000019739 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000006937 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002398 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021748 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015632 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016595 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008480 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019553 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000016148 | 2 retrocopies |