RetrogeneDB ID: | retro_cfam_216 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:381980..382442(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000003666 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2B | ||
Ensembl ID: | ENSCAFG00000001019 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2B [Source:HGNC Symbol;Acc:12473] |
Percent Identity: | 89.26 % |
Parental protein coverage: | 98.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFL |
P...RLM.D.K.LQEDP.VGVSGAPSENNIMQWN.VIFGPEGTPF.DGTFKLVIEFSEEYPNKPPTVR.. | |
Retrocopy | PTQKRLMWDLKQLQEDPSVGVSGAPSENNIMQWNTVIFGPEGTPFGDGTFKLVIEFSEEYPNKPPTVRLS |
Parental | SKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSA |
SKMFHPNVYADGSICLDILQN.WSPTYDV.SILTSIQSLLDEPNPNSPA.SQAAQL.QENKREYEKRVSA | |
Retrocopy | SKMFHPNVYADGSICLDILQNPWSPTYDVFSILTSIQSLLDEPNPNSPASSQAAQLHQENKREYEKRVSA |
Parental | IVEQSWNDS |
.VEQSWNDS | |
Retrocopy | VVEQSWNDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 33 .31 RPM |
SRP017611_brain | 0 .08 RPM | 22 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .72 RPM |
SRP017611_liver | 0 .00 RPM | 7 .40 RPM |