RetrogeneDB ID: | retro_cfam_335 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:115035016..115035325(-) | ||
Located in intron of: | ENSCAFG00000005986 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000000071 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.02 % |
Parental protein coverage: | 67.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LSIPFFSIPVVWTLTNVIHNLAMYVFLHTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPI |
L..P.....V....T......AMYVFLH.VKGTPFETPDQGKA.LLTH.E.MDY.L.F.S..KFLSISP. | |
Retrocopy | LETPGVEMSVTSRQTGF*SQQAMYVFLHMVKGTPFETPDQGKAWLLTHGEHMDYRLHFISFCKFLSISPV |
Parental | VLYLLASFYTKYDAAHFIINTASLLSVLLPKLP |
VL.LLASFYT.YD.AHF.INTASL.SV.L.K.P | |
Retrocopy | VLCLLASFYTRYDVAHFLINTASLFSVMLAKIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 5 .46 RPM |
SRP017611_brain | 0 .08 RPM | 3 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .77 RPM |
SRP017611_liver | 0 .00 RPM | 6 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000071 | 8 retrocopies |
retro_cfam_1078, retro_cfam_1248, retro_cfam_1512, retro_cfam_1786, retro_cfam_187, retro_cfam_335 , retro_cfam_576, retro_cfam_972,
|
Choloepus hoffmanni | ENSCHOG00000009601 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015224 | 1 retrocopy | |
Felis catus | ENSFCAG00000013964 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014896 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010920 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003575 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006292 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000911 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025353 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001695 | 2 retrocopies |