RetrogeneDB ID: | retro_cfam_46 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 9:47025055..47025688(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000019307 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GSTP1 | ||
Ensembl ID: | ENSCAFG00000011349 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris glutathione S-transferase pi 1 (GSTP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252167] |
Percent Identity: | 96.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPPYTITYFPVRGRCEAMRMLLADQGQSWKEEVVTMETWMKGSLKASCLYGQLPKFQDGDLTLYQSNAIL |
MPPYTI.YFPV.GRCEAM.MLLADQGQSWKEEVVTMETWMKGSLKASCLYGQLPKFQDGDLTL.QSNAIL | |
Retrocopy | MPPYTIIYFPVQGRCEAMHMLLADQGQSWKEEVVTMETWMKGSLKASCLYGQLPKFQDGDLTLNQSNAIL |
Parental | RHLGRSLGLYGKDQQEAALLDVVNDGVEDLRCKYALLIYTNYEAGKEEYVKALPGYLKPFETLLSQNEGG |
R.LGRSLGLYGKDQQEAALLDVVNDGVEDLRCKYALLIYTNYEAGKEEYVKALPGYLKPFETLLSQNEGG | |
Retrocopy | RQLGRSLGLYGKDQQEAALLDVVNDGVEDLRCKYALLIYTNYEAGKEEYVKALPGYLKPFETLLSQNEGG |
Parental | QAFIVGNQISFADYNLLDLLLIHQVLAPSCLDSFPLLSAYVARLSARPKLKAFLSSPEHVNRPINGNGKQ |
QAFIV.NQISFADYNLLDLLLIHQVLAPSCLDSFPLLSAYVARLS.R.KLKAFLSSPEHVNRPINGNGKQ | |
Retrocopy | QAFIVENQISFADYNLLDLLLIHQVLAPSCLDSFPLLSAYVARLSTRRKLKAFLSSPEHVNRPINGNGKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .59 RPM | 88 .32 RPM |
SRP017611_brain | 0 .24 RPM | 43 .51 RPM |
SRP017611_kidney | 0 .07 RPM | 292 .35 RPM |
SRP017611_liver | 0 .00 RPM | 144 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001020 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000011349 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000019812 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001519 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011529 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000004029 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038155 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002230 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008586 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000018237 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000003746 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008003 | 1 retrocopy |