RetrogeneDB ID: | retro_cfam_794 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 18:17137703..17138057(+) | ||
| Located in intron of: | ENSCAFG00000004262 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ATP6V1G1 | ||
| Ensembl ID: | ENSCAFG00000000513 | ||
| Aliases: | ATP6V1G2, ATP6G, ATP6V1G1 | ||
| Description: | Canis lupus familiaris ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 (ATP6V1G2), mRNA. [Source:RefSeq mRNA;Acc:NM_001014376] |
Retrocopy-Parental alignment summary:
>retro_cfam_794
ATGGCCAGTCAGTCCCAGGGTATCCAGCAGCTCCTGCAAGCTGAGAAACGGGCGGCTGAGAAGGTGGCAGATGCCAGAAA
GAGGAAAGCCCGGCATCTGAAGCAGGCAAAGGAGAAGGCACAGATGGAGGTGGAGCTGTACCGCAGAGAACGAGAGCAGG
AGTTCCAGAGCAAGCAACAGGCGGCCACGGGCTCCCAGGGGAACCTGTCGGCTGAGGTGGAACAGGCTACCAGACGCCAG
ATGCAGGGCATGCAGAGCTCCCAGCAGAGAAACCGTGAACGCGTCCTGGCCCAGCTTCTTGGCATGGTCTGCGACGTCAG
GCCCCAGGTCCATCCCAACTACCGGATTGCTGTC
ORF - retro_cfam_794 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 96.61 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVELYRREREQEFQSKQQAAMGSQGNLS |
| MASQSQGIQQLLQAEKRAAEKVADARKRKAR.LKQAKE.AQMEVELYRREREQEFQSKQQAA.GSQGNLS | |
| Retrocopy | MASQSQGIQQLLQAEKRAAEKVADARKRKARHLKQAKEKAQMEVELYRREREQEFQSKQQAATGSQGNLS |
| Parental | AEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRIAV |
| AEVEQATRRQ.QGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRIAV | |
| Retrocopy | AEVEQATRRQMQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRIAV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .17 RPM | 16 .04 RPM |
| SRP017611_brain | 0 .79 RPM | 37 .79 RPM |
| SRP017611_kidney | 0 .07 RPM | 1 .32 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .29 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_794 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_794 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_794 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000000513 | 1 retrocopy |
retro_cfam_794 ,
|
| Choloepus hoffmanni | ENSCHOG00000000207 | 1 retrocopy | |
| Macropus eugenii | ENSMEUG00000008277 | 1 retrocopy | |
| Tarsius syrichta | ENSTSYG00000007314 | 1 retrocopy |