RetrogeneDB ID: retro_meug_2002

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold78550:4464..4794(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000008277
• Aliases: None
• Description: None

Sequence

>retro_meug_2002
ATGGCCAGCCAGTCGCAGGGCATCCAGCAGCTTCTGCAGGCGGAGAGGCGCGCTATTGAAAAGATCACCGAAGCCCGCCG
GCGAAAGCTGGAGAGACTGAAGCAAGCCAAGGAAGAAGCCCAGAATGAGGTGGAACAGTACCGGCTGAAGAGGGAGGCGG
AATTCAAGGCCAGGGAGCTGGAGGCTCTTGGCAGCCACGGCACCACCAGCGTGGAACTGGAGAAGGAGACCGAGGCGAAA
ATAGCCTTAATCCAGGACCAGTACCGGAAAAATAAGGAGGCCACTGTGGAATTCCTGCTGAATTTGGTGTATCAAGTGCA
GCCCAAGCTC

Alignment

ORF - retro_meug_2002 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.82 %
• Parental protein coverage: 93.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQAAMGSQGNLS
          MASQSQGIQQLLQAE.RA.EK...AR.RK..RLKQAKEEAQ.EVEQYR..RE.EF......A.GS.G..S
Retrocopy MASQSQGIQQLLQAERRAIEKITEARRRKLERLKQAKEEAQNEVEQYRLKREAEFKARELEALGSHGTTS

Parental  AEVEQATRRQVQGMQSSQQRSRERVLAQLLGMVCDIRPQI
          .E.E..T.......Q.......E.....LL..V....P..
Retrocopy VELEKETEAKIALIQDQYRKNKEATVEFLLNLVYQVQPKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2002 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2002 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000513	1 retrocopy	retro_cfam_794,
Choloepus hoffmanni	ENSCHOG00000000207	1 retrocopy	retro_chof_2408,
Macropus eugenii	ENSMEUG00000008277	1 retrocopy	retro_meug_2002 ,
Otolemur garnettii	ENSOGAG00000032085	1 retrocopy	retro_ogar_1926,
Tarsius syrichta	ENSTSYG00000007314	1 retrocopy	retro_tsyr_871,