RetrogeneDB ID: | retro_chof_1254 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_23774:7873..8389(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COMMD7 | ||
Ensembl ID: | ENSCHOG00000008561 | ||
Aliases: | None | ||
Description: | COMM domain containing 7 [Source:HGNC Symbol;Acc:16223] |
Percent Identity: | 84.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QFSALTEVLFNFLTEPKEVERFLAQLSEFATTNQISLGPLRSIVKSLLLVPNGALKKSLTAEQVRADFIT |
QF.ALTE.LF.FLTEPKEVERFLAQLSEFA.TNQI.L.PLRSI.KSLLLVPNGALKKSLTA.QV.ADFIT | |
Retrocopy | QFLALTEMLFYFLTEPKEVERFLAQLSEFAITNQIHLSPLRSITKSLLLVPNGALKKSLTAKQVQADFIT |
Parental | LGLSEDKATYFSEKWKQNCHTLARWAIGQTLMINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGN |
LGLSEDKAT..SEKWKQNC.TLA.WA.G.TLMINQ.ID.EWKFGVTSG.S.LEKVGSI.LQLKLVVKKGN | |
Retrocopy | LGLSEDKAT*VSEKWKQNCPTLAQWAMGLTLMINQHIDREWKFGVTSGRSKLEKVGSIVLQLKLVVKKGN |
Parental | QTENLYIELTLPEFNSFLHQTEHLRTSMECFS |
QTENLYIE.TLP.F.SFLH..E..RTSMECFS | |
Retrocopy | QTENLYIEVTLP*FYSFLHKMELVRTSMECFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008561 | 2 retrocopies |
retro_chof_1254 , retro_chof_345,
|
Loxodonta africana | ENSLAFG00000008789 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010627 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019450 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006762 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006640 | 1 retrocopy |