RetrogeneDB ID: | retro_chof_1806 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_389622:462..837(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000003323 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000012823 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.6 % |
Parental protein coverage: | 71.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FVFCTRGELSKYRVPNLLGFYQQYGITTHHHPIRDGGTPDIASCCEIMEELAICLKNNRKTLIHCYGGLG |
..F..R..LSKYRVPNLLGFYQQY....HHHPI.DGGTPD.ASCCEIMEELAICLKNNRKTLIHCYGGLG | |
Retrocopy | YLFSARVQLSKYRVPNLLGFYQQY----HHHPIPDGGTPDVASCCEIMEELAICLKNNRKTLIHCYGGLG |
Parental | RSCLVAACLLLYLSDTVSPQQAIDSLRNVRGSGAIQTIKQYNYLHEFRDKLTAHLSSRD |
RSCLVAACLLLYLSDTVSPQQAIDSLR..RGSGA.QTIKQYNYLHEF.DKLTAHLSSRD | |
Retrocopy | RSCLVAACLLLYLSDTVSPQQAIDSLRDLRGSGAKQTIKQYNYLHEFSDKLTAHLSSRD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012823 | 1 retrocopy |
retro_chof_1806 ,
|
Echinops telfairi | ENSETEG00000018617 | 1 retrocopy | |
Felis catus | ENSFCAG00000015089 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014833 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002497 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000015559 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008977 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010203 | 2 retrocopies |