RetrogeneDB ID: | retro_tbel_1809 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5799:112570..112909(-) | ||
Located in intron of: | ENSTBEG00000009176 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDKN3 | ||
Ensembl ID: | ENSTBEG00000010203 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:1791] |
Percent Identity: | 86.73 % |
Parental protein coverage: | 52.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MKPPISIQTSEFDSSDEE-PIEDEQTPIQISWLPLSQVNCSQFLGLCALPGCKFKDVRRNIQKDTEELKN |
MK.PISIQ.SE.DSSDEE.P.EDEQTPIQIS.LPLSQVNCSQFLGLC.LPGCKFKDVRRN.QKDTEELKN | |
Retrocopy | MKSPISIQASELDSSDEEEPVEDEQTPIQISRLPLSQVNCSQFLGLCILPGCKFKDVRRNSQKDTEELKN |
Parental | YGIQDIFFFCTRG-LSKYRVPNLLNFYQQYGIITHHHPIPDGG |
YGI.DIF.FC.RG.LSKYRVPNLLN.YQQYGI.TH.HPIPDGG | |
Retrocopy | YGI*DIFVFCARGELSKYRVPNLLNLYQQYGIMTHPHPIPDGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012823 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018617 | 1 retrocopy | |
Felis catus | ENSFCAG00000015089 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014833 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002497 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000015559 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008977 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010203 | 2 retrocopies |
retro_tbel_1809 , retro_tbel_4700,
|