RetrogeneDB ID: retro_chof_1934

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_426308:333..558(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSCHOG00000004967
• Aliases: None
• Description: None

Sequence

>retro_chof_1934
AGGCTTAAGGCAGCAGTTCACTACACTGTTGGTTGTCTTTGTGAGGAAGTTGCATCGGACAAAGAGATGCAGTTCAGCAA
ACAAACCATTGCAGCGATTTCAGAGGTGACTTTCCGACAGTGTGAACTTTTTGCCAAAGACCTTGAAATGTTTGCAAGAC
ATGCAAAAAGAAGCACAATTAACACTGAGGATGTGAAGCTCTTAGCCAGGAGGAGTAATTCACTG

Alignment

ORF - retro_chof_1934 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100.0 %
• Parental protein coverage: 53.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RLKAAVHYTVGCLCEEVASDKEMQFSKQTIAAISEVTFRQCELFAKDLEMFARHAKRSTINTEDVKLLAR
          RLKAAVHYTVGCLCEEVASDKEMQFSKQTIAAISEVTFRQCELFAKDLEMFARHAKRSTINTEDVKLLAR
Retrocopy RLKAAVHYTVGCLCEEVASDKEMQFSKQTIAAISEVTFRQCELFAKDLEMFARHAKRSTINTEDVKLLAR

Parental  RSNSL
          RSNSL
Retrocopy RSNSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_1934 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000004967	1 retrocopy	retro_chof_1934 ,
Dipodomys ordii	ENSDORG00000006387	1 retrocopy	retro_dord_519,
Macropus eugenii	ENSMEUG00000004963	1 retrocopy	retro_meug_878,