RetrogeneDB ID: retro_meug_878

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold2180:33252..33469(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000004963
• Aliases: None
• Description: None

Sequence

>retro_meug_878
CTAAAAGCAGCAGTCCACAACACGACTGGCTCTGCATCCCAGGAAGCCGCCAAAGAGACAGAGTTCAGCAAACCAACCAC
AACAGTCCCTTCAGAAGTCACCTTTCAACAGTGTGAAATTTTTGCCAAAGACCTTGAGATATTTGCTAGACGTATAAAAA
AAAGGAGCAGCTAACATGGAAGGTGAGAAGTTGTTAGCCAGAAGCAACAACTCACTG

Alignment

ORF - retro_meug_878 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.79 %
• Parental protein coverage: 50.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LKAAVHYNGGSLGQEAVVDKDMFSKTTVVISEVTFQQHEHFARDLELFARH-AKRSTINMEDVKLLARRS
          LKAAVH...GS..QEA.........TT.V.SEVTFQQ.E.FA.DLE.FAR........NME..KLLAR..
Retrocopy LKAAVHNTTGSASQEAAKETEFSKPTTTVPSEVTFQQCEIFAKDLEIFARR>XXXGAANMEGEKLLARSN

Parental  SSL
          .SL
Retrocopy NSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_878 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_878 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000004967	1 retrocopy	retro_chof_1934,
Dipodomys ordii	ENSDORG00000006387	1 retrocopy	retro_dord_519,
Macropus eugenii	ENSMEUG00000004963	1 retrocopy	retro_meug_878 ,