>retro_cjac_1182
ATAGCCACCAAGATCGACAAAGAAGCTTGCTGGGCGGCGTACAACCTGGTGCGCGACGACGGCTCGTCCGTCATCTGGGT
GACTTTTAAATATGACGGCTCCACCATCGTCCCCGGCGAGCAGGGAGCGGAATACCAGCACTTCATCCAGCAGTGCACAG
ATGACGTCCGGTTGTTTGCCTTCGTGCGCTTCACCACCGGGGATGCCATGAGCAAGAAGCCCAAGTTCACTCTCATCACA
TGGATCAGTGAGGACGTCAGCGGGCTGGAGCGCGCCAAAACCAGGACGGACAAGACCCTGGTCAAGGAGGTCGTATAGAA
TTTCGCTAAGGAGTTTGTGATCAGTGATCGGAAGGAGCTGGAGGAAGATTTCATCAAGAGTGAGCTGAATAAGGCGGGCG
GAGCCATCTACGACGCCCAG
ORF - retro_cjac_1182 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.43 % |
Parental protein coverage: |
98.59 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFVRFTTGDAM |
| .ATKIDKEAC.AAYNLVRDDGS.VIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFVRFTTGDAM |
Retrocopy | IATKIDKEACWAAYNLVRDDGSSVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFVRFTTGDAM |
|
Parental | SKRSKFALITWIGEDVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSELKKAGGANYDAQ |
| SK..KF.LITWI.EDVSGL.RAKT.TDKTLVKEVV.NFAKEFVISDRKELEEDFIKSEL.KAGGA.YDAQ |
Retrocopy | SKKPKFTLITWISEDVSGLERAKTRTDKTLVKEVV*NFAKEFVISDRKELEEDFIKSELNKAGGAIYDAQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .02 RPM |
16 .62 RPM |
SRP051959_heart |
0 .04 RPM |
4 .79 RPM |
SRP051959_kidney |
0 .04 RPM |
27 .87 RPM |
SRP051959_liver |
0 .02 RPM |
8 .40 RPM |
SRP051959_lung |
0 .02 RPM |
18 .02 RPM |
SRP051959_lymph_node |
0 .05 RPM |
32 .88 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
1 .29 RPM |
SRP051959_spleen |
0 .06 RPM |
28 .34 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_1182 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_1182 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_1182 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
5 retrocopies.