>retro_cjac_1447
ATGGAGGAGAGCGGGTACCAGTCGGTGCTGTGTGTCAAGCCTGACGTCCACGTCTACCGCATCCCTCCGCGGGCTACCAA
TCATGGCTACGGGGCCACGGAGTGGCAGCTGGATCAGCCGTCATGGAGTGGCCAGCTGAGGATCACTGCAAAGGGGCAGA
TGGCCTATATCAAGCTGGAGGACAGGACCTCAGGGGAGCTCTTTGCTCAGGCCCCAGTGGATCAGTTTCCTGGTACAGCT
GTGGAGAGCCTAACGGATTCCAGCAGGTACTTCGAGATCCGCATTGAAGATGGAAACGGGCGACGGGCATTTAATGGAAT
TGGCTTCGAGGACCGAGGTGATGCCTTTAACTTCCATGTTGCATTGCAGGATCGTTTCAAGTGGGTGAAACAGCAGTGCG
AATTTGCAAAACAAGCCCAGAACCCAGACCAAAGACCCAAATTGGACCTGGGCTTCAAGGAGGGCCAGACCATCAAGCTC
AATGTCGCAAACATGAAGAAGGAAGGAGCAGCCGGGAATCCCGAGCCCGGCCTGCCAGCACAGGAGGGTTGAGCTTGCTT
CCCCCTCCCCCAGAGGGCAAAACCACCACCCTCATCCGTCCCCCTGGGGAGCAGTTGTCGGTTGGGGGATCCCTCATCCA
GCCAGCAGTTACTCCCACTTCAGGAGGTGCTTCTGTACCCTGGCCATGGCCCGAGCCTGCCACCGCTGCCACTGCTGACA
TCTGGGGAGACTTTACCAAATCTACAGGATCAACTTCCAGCCAGACCCAACCAGGCTGGGTTCAGTTC
ORF - retro_cjac_1447 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.94 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQ |
| MEESGY.SVLCVKPDVHVYRIPPRATN.GY.A.EWQLDQPSWSG.LRITAKGQMAYIKLEDRTSGELFAQ |
Retrocopy | MEESGYQSVLCVKPDVHVYRIPPRATNHGYGATEWQLDQPSWSGQLRITAKGQMAYIKLEDRTSGELFAQ |
|
Parental | APVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQ |
| APVDQFPGTAVES.TDSSRYF.IRIEDGNGRRAF.GIGF.DRGDAF.F.VALQD.FKWVKQQCEFAKQAQ |
Retrocopy | APVDQFPGTAVESLTDSSRYFEIRIEDGNGRRAFNGIGFEDRGDAFNFHVALQDRFKWVKQQCEFAKQAQ |
|
Parental | NPDQSPKLDLGFKEGQTIKLNIANMKKKEGAAGNP-RARPASTGGLSLLPPPPGGRTSTLIPPPGEQLSV |
| NPDQ.PKLDLGFKEGQTIKLN.ANM.KKEGAAGNP.RARPASTGGLSLLPPPP.G.T.TLI.PPGEQLSV |
Retrocopy | NPDQRPKLDLGFKEGQTIKLNVANM-KKEGAAGNP<RARPASTGGLSLLPPPPEGKTTTLIRPPGEQLSV |
|
Parental | GGSLVQPAVAPTSGGASVPWPQPKPATAATADIWGDFTKSTGSTSSQTQPGWVQF |
| GGSL.QPAV.PTSGGASVPWP.P.PATAATADIWGDFTKSTGSTSSQTQPGWVQF |
Retrocopy | GGSLIQPAVTPTSGGASVPWPWPEPATAATADIWGDFTKSTGSTSSQTQPGWVQF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .00 RPM |
12 .20 RPM |
SRP051959_heart |
0 .00 RPM |
8 .61 RPM |
SRP051959_kidney |
0 .00 RPM |
15 .51 RPM |
SRP051959_liver |
0 .00 RPM |
9 .68 RPM |
SRP051959_lung |
0 .00 RPM |
19 .07 RPM |
SRP051959_lymph_node |
0 .00 RPM |
32 .94 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
4 .04 RPM |
SRP051959_spleen |
0 .00 RPM |
34 .52 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_1447 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_1447 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_1447 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.